Rhizobium sp. Pop5: NE852_14885
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Entry
NE852_14885 CDS
T11439
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhip Rhizobium sp. Pop5
Pathway
rhip03030
DNA replication
rhip03410
Base excision repair
rhip03420
Nucleotide excision repair
rhip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NE852_14885 (ligA)
03410 Base excision repair
NE852_14885 (ligA)
03420 Nucleotide excision repair
NE852_14885 (ligA)
03430 Mismatch repair
NE852_14885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhip03032
]
NE852_14885 (ligA)
03400 DNA repair and recombination proteins [BR:
rhip03400
]
NE852_14885 (ligA)
Enzymes [BR:
rhip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NE852_14885 (ligA)
DNA replication proteins [BR:
rhip03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NE852_14885 (ligA)
DNA repair and recombination proteins [BR:
rhip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NE852_14885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NE852_14885 (ligA)
MMR (mismatch excision repair)
DNA ligase
NE852_14885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NE852_14885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DUF4796_N
RNA_ligase
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
UVD55379
LinkDB
All DBs
Position
complement(2546967..2549123)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALETR
FPELIREDSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLTTAATRGDGTTGENVTANIRTIAEIPNQLPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAW
GEMSDMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNNGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRL
AEAKPYEFPQTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDTSLQIRTAPEIFTLEKRQQQSITKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWTDLNAIE
GIGEVVARAMVEFYKEPRNTEVIGRLLEEVTPAEAEQPVTSGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgatacgttgacgatcgaagaggccgccgccgagctc
gaacggctggcgaaggagatcgcgcatcacgacgcgctctatcacggcaaggaccggccg
gagatttcggatgcggattacgacgcgttgaagcgccgcaacgatgcgctggaaacgcgg
tttcccgagctgatccgcgaggacagcccgtcgcggcgtgtgggtgcagcgccttccgtc
accttctcgcccgtcgtccatgcgcggccgatgctatcgctggacaacacgttttcgcag
gaggacgtgcaggatttcgtcgccagcgtctatcgcttcctcggccgactgccggaccag
tcgatcgcctttaccgcggagccgaagatcgacggcctctcgatgtcgatccgctacgag
aacggcaggctgacgacggccgccacgcgcggcgacggcacgacgggggaaaacgtcacc
gccaatatccggaccatcgccgaaatcccgaaccaattgccgaagggcgtgcccgcggtc
gtggaaatccgcggcgaggtctatatggccaagagcgacttcctggcgctgaaccggcag
atggaggcggagggcaagcagacctatgtcaatccgcgcaatacagcggccggatcgctg
cgccaactcgatgccaaggtgacggcgagccgcaagctgagattcttcgcctatgcctgg
ggcgagatgtcggacatgccggccgatacgcaattcgggatggtgcagaccttcaaggac
tggggcttcccggtcaatccgctgatgaagcggctgaattcggtcgccgatattctggcg
cattacgatgagatcggcctcgagcgcccggatctcgattacgacatcgacggcgtcgtc
tacaaggtcgacagtctggaactgcagcagcgcctcggcttccgttcgcgtagcccacgc
tgggcgacggcgcataaattcccggctgagcaggccttcaccgaggtcgagaagatcgag
atccaggtcggccgcaccggggcgctgacgccggtggcgcggctgaagccaatcacggtc
ggcggtgtggtcgtcaccaacgcgacgctgcacaacgaggattacatcaagggcatcggc
aataacggcgagcggatccggccggaggagcacgatattcgcgagggcgataccgtgatc
gtccagcgcgccggcgacgttattccgcagatcctcgacgtggtgatggaaaagcgcctc
gccgaggcgaaaccttatgaattcccgcagacctgcccggtctgcggttcgcatgcggtg
cgcgaggtcaacgagaagaccggtaagatggattcggtgcgccgctgcaccggcggcttc
atctgccgggcgcaggcgacggagcatctgaagcacttcgtttcgcgcaacgccttcgat
attgaagggctcggttcgaagcagatcgatttcttcttcgaaaacgaagacacgtcgcta
cagatccgcacggcgcccgagatattcacgctggagaagcgccagcagcaatcgatcacc
aagctggaaaatatcgatggcttcggcaaggtcagcgtcggcaagctctatgcggcgatc
aacgagcgccgcagcattgcgctccaccgcttcatctacgcactcggcatccgccatgtc
ggcgagaccacggcaaagctcttggcgcgctcctacggcacttatgaggcctttgcgacc
gcgatgaaggaggccgcaccgctttccggcgatgcctggaccgatctcaacgccatcgaa
ggcatcggcgaggtggtggcccgcgccatggtcgaattctacaaggagccgcgcaatacc
gaggtgatcggccggctgcttgaagaagtgacgcccgcggaggccgagcagcctgtcacg
tcaggcagcccggtcgccggcaagaccgtggtcttcaccggctcgctcgaaaaattcacc
cgtgacgaggcgaaggcaagggccgaaagcctcggcgccaaggtggcggggtcggtgtcg
aagaaaacagacatcgtcgtcgccggcccgggcgccggctccaagctcgacaaagcccgc
gaactcggcgtccagacgatggacgaggacgagtggctggcgctgatcggcgggtga
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