Rhizobium sp. SRDI969: N2A41_14130
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Entry
N2A41_14130 CDS
T11552
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhis Rhizobium sp. SRDI969
Pathway
rhis03030
DNA replication
rhis03410
Base excision repair
rhis03420
Nucleotide excision repair
rhis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N2A41_14130 (ligA)
03410 Base excision repair
N2A41_14130 (ligA)
03420 Nucleotide excision repair
N2A41_14130 (ligA)
03430 Mismatch repair
N2A41_14130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhis03032
]
N2A41_14130 (ligA)
03400 DNA repair and recombination proteins [BR:
rhis03400
]
N2A41_14130 (ligA)
Enzymes [BR:
rhis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N2A41_14130 (ligA)
DNA replication proteins [BR:
rhis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N2A41_14130 (ligA)
DNA repair and recombination proteins [BR:
rhis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N2A41_14130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N2A41_14130 (ligA)
MMR (mismatch excision repair)
DNA ligase
N2A41_14130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N2A41_14130 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Lar_restr_allev
RNA_ligase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UWM79865
LinkDB
All DBs
Position
complement(2799610..2801766)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSTVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEMR
FPELIREDSPSRHVGAAPSVTFAPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILTHYDEIGLKRPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTIVENIDIQVGRTGALTPVARLTPITV
GGVVVTNATLHNADYIQGIGNSGERIRDDEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRP
AEAKPYEFPKTCPVCGSHAVRERHEKTGKLDSVTRCTGGFICRAQAMEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDPSLQIRTAPDIFTLEERQRDSLTKLENIDGFGKVSVGKLYGAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYGAFETAMREAETLSGDAWNDLNAIE
GIGEVVARAIVEFYKEPRNVEVITRLLEEVTPEEAEQPKTAGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccaccgtcgacacgttgacgatcgaagaggctgccgccgagctc
gaacggctggcaaaggagatcgcgcatcacgatgctctctaccacggcaaggaccggccg
gagatttcggatgccgattacgacgcgctgaagcgccgcaacgatgcgctggaaatgcgg
tttcccgagctgattcgtgaggacagcccgtcgcggcatgtcggtgcagcgccctccgtc
accttcgcgcctgttgttcatgcgcggccgatgctgtcgctcgacaacaccttctcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgctttctcggccggctgccggaccag
tcgatcgcctttactgcggaaccgaagatcgacggcctgtcgatgtcgatccgttacgag
aacggcaggctggtgacggccgcgacgcgcggcgacggcacgacgggcgagaacgtcact
gccaacatccggaccatcgccgaaatccccaacgagctgccgaaaggcgtgcccgccgtc
gtggagatccgcggcgaagtctatatggccaagagcgacttcctggcactgaaccggcag
atggaggcggagggcaagcagacctatgtcaatccgcgcaacaccgcggccgggtcgcta
cgccagctcgacgccaaggtgacggcgagccgcaagctgaaattcttcgcttatgcctgg
ggcgagatgtcggagatgcccgccgatacacagttcggtatggtgcagaccttcaaggac
tggggttttccggtcaatccgctgatgaaacggttgaactcggtcgccgacatcctgacg
cattatgacgagatcgggctcaagcgcccggatctcgactacgacatcgatggcgtcgtt
tacaaggtcgacagtctcgaactgcaggcccgtcttggcttccgctcgcggagcccgcgc
tgggcgacggcgcacaagtttcctgccgaacaggctttcacgatcgtcgagaacatcgac
atccaggttggccgcactggcgcgttgaccccggtggcgcgtttgacgccgatcaccgtc
ggcggcgtggtcgtcaccaatgcgacgctgcacaacgcggattacatccagggcatcggc
aatagcggtgaacgcatccgcgacgacgagcacgatatccgcatcggcgataccgtcatc
gtgcagcgcgccggcgacgtcattccgcaggtactcgacgtcgtcatggagaaacgcccg
gccgaggccaagccctatgaatttccgaagacctgcccggtctgcggttcgcatgcggtg
cgtgaaagacatgagaagaccggcaagctcgattcggtcacccgctgcaccggtggtttc
atctgcagggcgcaggcgatggagcacctgaagcacttcgtttcgcgcaacgccttcgat
atcgaagggctcggttcgaagcagatcgacttcttctttgaaaacgaggatccgtcgctg
cagatccgcaccgcgcccgatatctttacgctggaggaacggcagcgggattcattgacc
aagctcgagaatatcgacggcttcggcaaggtcagcgtcggcaagctctatggcgcgatc
aacgagcggcgcagcatagcgctccatcgctttatctacgcgctcggcatccgtcatgtc
ggcgagaccacggcgaagctgctggcgcgttcctacggcacctatggggcattcgagacg
gcgatgcgggaggccgagacactttccggcgacgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtggtcgcgcgcgccatcgtcgaattctacaaggagccgcgcaacgtc
gaggtgatcacccgactgcttgaggaagtgacgcccgaggaggccgagcaaccgaagacg
gcaggcagtccggttgccggcaagacggtggttttcaccggctcgctggaaaagtttacc
cgcgacgaggcaaaggcgagggccgaaagcctcggcgccaaggtggcgggatcggtctcg
aagaagaccgacatcgtcgtcgccggccccggcgccggctccaagctcgacaaggcgcgc
gaactcggcgtgcagacgatggacgaggatgaatggctggcgctgatcagcggctga
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