Rhodoblastus sp. SSC7: HZY79_10540
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Entry
HZY79_10540 CDS
T06718
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhj
Rhodoblastus sp. SSC7
Pathway
rhj03030
DNA replication
rhj03410
Base excision repair
rhj03420
Nucleotide excision repair
rhj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZY79_10540 (ligA)
03410 Base excision repair
HZY79_10540 (ligA)
03420 Nucleotide excision repair
HZY79_10540 (ligA)
03430 Mismatch repair
HZY79_10540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhj03032
]
HZY79_10540 (ligA)
03400 DNA repair and recombination proteins [BR:
rhj03400
]
HZY79_10540 (ligA)
Enzymes [BR:
rhj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZY79_10540 (ligA)
DNA replication proteins [BR:
rhj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZY79_10540 (ligA)
DNA repair and recombination proteins [BR:
rhj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZY79_10540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZY79_10540 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZY79_10540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZY79_10540 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
DUF6981
Zn_ribbon_PaaD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QLP97732
LinkDB
All DBs
Position
2225574..2227682
Genome browser
AA seq
702 aa
AA seq
DB search
MRSPFVRECVALVRFRASSSIRAARAEHKRLGEELARHDLAYHQNDAPLIADGEYDALKR
RYLALEAAFPALAKEGSVADKVGAPASEKFAKIRHVVPMLSLGNVFSDAEVGEFVARVRR
FLGLGEEAPLAFTAEPKIDGLSLSLRYENGELTRAATRGDGFEGEDVTANARVVASIPQR
LVGDPPALLKARGEVYMTNADFAAMNARQEAAGEKLFANPRNAAAGSLRQLDAAITASRP
LHFFAYGWGEASAMPATTQSGMLDAFRGYGLPVNPRTALCRSVDEMLAIYRGLEADRARL
GYDIDGVVYKVDDLALQQRLGFVSRAPRWATAHKFPAQQATTELLGIDVQVGRTGALTPV
ARLRPVTVGGVVVSNATLHNEDEIARKDVRVGDRVIVQRAGDVIPQIVGVAERGEGATPY
VFPKTCPVCGSAAAREEDEKGADVVWRCSGGLYCPAQAVERLKHFCSRLAMDIEGLGDKQ
IEEXFEAGLIRTPADIFTLEARDRASLRKIKDRDGFGETSTRNLFAAIEARRSIALNRFI
YALGVRRVGETNARRLARHFHSFESLRAAATASNAAEELTAIDGVGATVAQAVVAFFGEP
HNQEVVAALLAEVSPQEMEAVAAESPVAGKTVVFTGSLERMTRDEAKAMAERLGAKVSGS
VSKKTDLVVAGPNAGSKLAKAAELGIEVIDEEAWLARVGAAS
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgcctttcgtccgcgagtgcgtcgcccttgtccgattccgcgcttcctcctcg
atacgcgccgcgcgcgcagagcataagcgcctcggcgaagagttggcgcggcacgatctc
gcttatcaccagaacgacgcgccgctgatcgcggacggcgagtatgacgcgctgaagcgt
cgctatctcgcgctggaggcggcgtttcccgcgctcgcgaaggagggttccgtcgccgac
aaggtcggcgcgccggcgtcggagaaattcgccaagatccgccacgtcgtgccgatgctg
tcgctcggcaacgtgttttccgacgcggaggtcggcgagttcgtcgcgcgggtgcggcgc
tttctcgggcttggcgaggaagcgccgctggcgttcaccgccgagccgaagatcgacggg
ctgtccttgtcgctgcgttacgagaacggcgaactgacgcgcgcggcgacgcgcggcgac
ggattcgagggcgaggacgtcaccgccaacgcgcgggtcgtggcgtcgatcccgcagcgt
ctcgtcggcgatccgccggcgcttctgaaagcgcgcggcgaggtctacatgaccaacgcc
gacttcgcggcgatgaacgcgcggcaggaggcggccggcgagaagctgttcgccaatccg
cgcaacgcggccgcagggtcgctgcgccagctcgacgcggcgatcaccgcgtcacggcct
ttgcatttcttcgcctatggctggggcgaggcatcggccatgcccgcgacgacgcagagc
gggatgctcgatgcgtttcgcggctatggattgccggtcaatccgcgcacggcgctgtgc
cgctccgtcgacgaaatgcttgcgatctatcgcggccttgaagccgaccgcgcgcggctc
ggctacgacatcgacggcgtcgtctacaaggtcgacgatctcgccttgcagcagcgcctg
ggcttcgtgtcgcgcgcgccgcgctgggcgacggcgcacaagtttcccgcgcagcaggcc
acgacggagctattggggatcgacgttcaggtcgggcgcacgggcgcgctgacgccggtg
gcgcggctgcggccggtgacggtgggcggcgtcgtggtgtcgaacgcgacgctgcacaat
gaagacgaaatcgcgcgaaaggacgtgcgcgtcggcgaccgggtgatcgtgcagcgcgcc
ggcgacgtgatcccgcagatcgtcggcgtcgccgagcgcggagagggcgcgacgccctac
gtctttccgaagacctgccccgtgtgcggctcggcggcggcgcgcgaggaggacgagaag
ggcgccgacgtggtgtggcgctgctcgggcggactgtattgcccggcgcaggcggtcgag
cggctgaagcatttctgctcgcggctggcgatggacatcgagggccttggcgacaagcag
atcgaggagttnttcgaggccgggctgatccgcacgccggccgacatcttcacgctggag
gcgcgcgaccgcgcctcgctcaggaagatcaaggatcgcgacggtttcggggagacgtcg
acgcgcaatctgttcgcggcgatcgaggcgcggcgcagcatcgcgctcaaccgcttcatc
tacgcgctcggcgtgcgacgcgtgggcgaaaccaacgcgcgcaggctggcgcggcacttc
catagcttcgagtcgctgcgcgcggccgcgacggcgtcgaacgctgcggaggagctgacc
gccatcgacggcgtcggcgccacggtggcgcaggcggtggtcgctttcttcggcgagccg
cacaatcaagaagtcgtcgccgcgctgctcgcggaggtgagcccgcaagagatggaggcg
gtcgcggccgagagccccgtcgcgggcaagaccgtcgtgttcaccgggtcgctcgaacgg
atgacgcgcgacgaggcgaaggcgatggccgaaaggctcggcgccaaagtgtccggctcg
gtttcgaagaagaccgacctcgtggtggccggcccgaacgccggatccaagctcgccaag
gccgcggagctggggatcgaggtgatcgacgaggaggcctggctggcgcgcgtgggcgcg
gcgtcgtga
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