KEGG   Rhodococcus sp. JS3073: OYT95_06920
Entry
OYT95_06920       CDS       T10731                                 
Name
(GenBank) bifunctional FO biosynthesis protein CofGH
  KO
K11779  FO synthase [EC:2.5.1.147 4.3.1.32]
Organism
rhjs  Rhodococcus sp. JS3073
Pathway
rhjs00680  Methane metabolism
rhjs01100  Metabolic pathways
rhjs01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:rhjs00001]
 09100 Metabolism
  09102 Energy metabolism
   00680 Methane metabolism
    OYT95_06920
Enzymes [BR:rhjs01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.147  5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase
     OYT95_06920
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.1  Ammonia-lyases
    4.3.1.32  7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
     OYT95_06920
SSDB
Motif
Pfam: Radical_SAM CofH_C DUF6533 LRS4
Other DBs
NCBI-ProteinID: WAM18652
LinkDB
Position
complement(1477346..1479919)
AA seq 857 aa
MLPMPGVPAPAPSGASAQEVAPSASAMRRVLRRARDGATLNVDEATTLLQARGGDLADLC
SSAAKVRDAGLLAAGRPRAVTYSRKVFIPLTRLCRDKCHYCTFVTVPGKLRAEGRGAYLE
PDEVLEIARQGAELGCKEALFTLGDRPEDRWPEAKQWLDERGYDSTLDYLRAMSIRVLEE
TGLLPHLNPGVMSWEEISRLKPVAPSMGMMLETTSTRLFTDKGECHYGSPDKDPAVRLRT
LTDAGRLSVPFTTGILVGIGETVRERAESIMAIRKSHKAFGHVQEVIVQNFLAKPDTAMR
DAPDAGLEEFLATIAVSRLLLGPGMRIQSPPNLVSNTECLALLGAGVDDWGGVSPLTPDH
VNPERPWPNLDTLAAITAEAGFELTERTAAQPQFVLAGSPWIDPRITGHVQALADPHTGL
AKPDTTPVGLPWQEPDESWESAGRVDLNTEIDTEGRNTETRSDLGSAFGDWETVREQVLE
LSGPVRVDTDVLAALRAAERDPAGCTDDEYLALATAEGPGLEAMVALADALRKDAVGDEV
TYVVNRNINFTNICYTGCRFCAFAQRKGDADAFTLSTGEVADRAWEAHVAGATEVCMQGG
IDPELPVTGYADLVRAVKARVPSMHVHAFSPMEIVNGASRGGQSIRDWLTELREAGLDTI
PGTAAEILDDEVRWVLTKGKLPTATWIEVVTTAHELGLRSSSTMMYGHVDNPKHWVGHLR
VLRGIQDRTGGFTEFVPLPFVHQSAPLYLAGASRPGPTNRDNRAVHALARIMLHGRIPNI
QTSWVKLGVTGTQVMLQGGANDLGGTLMEETISRMAGSEHGSEKTVAELRAIAEGIGRPA
RERTTTHARREGRTPAA
NT seq 2574 nt   +upstreamnt  +downstreamnt
atgcttcccatgcccggtgtcccggcgccggctccgtccggcgcgtctgcgcaggaagtg
gccccttccgcctctgctatgcggcgggtgctgcgacgtgcccgcgacggcgccactctg
aacgtggacgaggcgacgaccctgctgcaggcccgcggcggcgacctggccgacctgtgt
tcgtcggcggcgaaggtccgggacgccgggttgctggcggcgggcagacccagggctgtc
acgtactcgcgcaaggtgttcattccgctgacgcggttgtgccgggacaagtgccactac
tgcacgttcgtgaccgtgcccggcaagctgcgggccgaggggcgcggcgcgtatctggaa
ccggacgaggtgctggagatcgcccggcagggcgccgaattgggctgcaaggaagccctg
ttcacgttgggtgaccgtcccgaggatcggtggccggaggccaagcagtggctggacgag
cggggctacgattcgacgctggactacctgcgggcgatgtcgatccgggtgctcgaggag
accgggctgctgccgcacctgaacccgggtgtgatgagctgggaggagatctctcgcctc
aagccggtggccccgtcgatgggcatgatgctcgagacgacgtccacccggttgttcacc
gacaagggcgagtgccactacggcagccccgacaaggatccggcggtacggttgcgcacg
ctcaccgacgccgggcggttgagtgtgccgttcacgacgggcattctggtgggcatcggc
gagaccgtgcgggaacgggcggaatcgatcatggcgatccgcaagtcgcacaaggcgttc
gggcacgttcaggaagtgatcgtccagaacttcctcgccaagcccgacaccgcgatgcgc
gatgccccggacgcggggctcgaggagtttctcgcgaccatcgccgtgtcccggctgctg
ctgggcccggggatgcgcatccagtcgccgcccaacctggtgtcgaacaccgaatgcctg
gcgttgctgggtgccggtgtcgacgactggggtggcgtgtcgccgctgaccccggaccac
gtgaacccggagcggccgtggccgaacctggacaccctggccgcgatcaccgcggaggcc
gggttcgagctcaccgagcgcacggcggcgcagccgcagttcgtgctggccggctcgccc
tggatcgatccgcggatcaccgggcacgtgcaggccctcgcggacccgcacaccgggctg
gcgaagcccgacacgacgccggtcgggttgccgtggcaggagccggacgagtcctgggag
tcggccggccgggtggatctgaacaccgagatcgacaccgagggccgcaacaccgagacg
cgcagcgatttgggcagcgcgttcggggactgggagaccgtccgcgagcaggtgctggag
ttgagcggcccggtgcgggtggacacggacgtcctcgcggcgctgcgggccgccgagcgc
gacccggcgggctgcaccgacgacgaatacctggcgttggcgacggccgagggtccaggg
ctcgaggcgatggtggcgctggcggatgcgctccgcaaggacgccgtcggcgacgaggtg
acctatgtggtgaaccggaacatcaacttcaccaacatctgctacaccggctgccgcttc
tgcgcgttcgcgcagcgcaagggtgacgcggacgcgttcacgctgtccaccggcgaggtc
gcggaccgggcgtgggaggcgcacgtcgcgggcgcgacggaggtctgcatgcagggcggc
atcgacccggaactcccggtcaccgggtacgccgatctggtgcgtgcggtgaaggcgcgg
gtgccgtcgatgcacgtgcacgcgttctccccgatggagatcgtcaacggcgcctcccgc
ggcgggcagagcatccgggactggctgacggaactgcgtgaggcgggtctggacaccatt
cccggcacggccgcggaaatcctggacgacgaggtgcggtgggtgctcaccaagggcaaa
ctgcccaccgccacctggatcgaggtggtgaccacggcgcacgagctgggtctgcggtcg
agttcgacgatgatgtacggccacgtcgacaacccgaagcactgggtcgggcatctgcgg
gtgctgcgcggaatccaggaccggacaggcggattcaccgagttcgttccgctgcccttc
gtgcatcagagcgcgccgttgtatctggcgggtgcgtcgcggccgggcccgaccaaccgg
gacaaccgggccgtccacgccctggcccggatcatgctgcacgggcggatcccgaacatc
cagaccagctgggtcaagctgggcgtcaccggcacccaggtgatgttgcagggcggcgcc
aacgacctcggcggcaccctgatggaggagaccatctcccggatggcgggttcggagcac
ggatccgagaagaccgtcgccgaactgcgggccatcgccgagggcatcggccgcccggca
cgcgaacgcaccaccacacacgcacgacgcgagggaaggacgccggccgcatga

KEGG   Rhodococcus sp. JS3073: OYT95_22355
Entry
OYT95_22355       CDS       T10731                                 
Name
(GenBank) bifunctional FO biosynthesis protein CofGH
  KO
K11779  FO synthase [EC:2.5.1.147 4.3.1.32]
Organism
rhjs  Rhodococcus sp. JS3073
Pathway
rhjs00680  Methane metabolism
rhjs01100  Metabolic pathways
rhjs01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:rhjs00001]
 09100 Metabolism
  09102 Energy metabolism
   00680 Methane metabolism
    OYT95_22355
Enzymes [BR:rhjs01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.147  5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase
     OYT95_22355
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.1  Ammonia-lyases
    4.3.1.32  7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
     OYT95_22355
SSDB
Motif
Pfam: Radical_SAM CofH_C
Other DBs
NCBI-ProteinID: WAM12191
LinkDB
Position
4948333..4950891
AA seq 852 aa
MTSLSRALARVSSAKTIDAGEAEALLSARGGDLDRLCEAAAAVRSAGLFDAGRPGVVTYS
RKVFIPLTRLCRDRCHYCTFATTPGRVDEPFLSPDQVLEIAREGARMGCKEALFTLGDRP
EDRWDAAREWLESRGYADTLSYVRAMAVLVLEETGLVPHLNPGIMSWAELQRLKPVAGSM
GLMLESTARSLWAEPGGCHYGSPDKNPAVRLACIEDASRTNIPFTTGILVGIGESHADRV
ESILQIRRIARQYGAVQEVIVQNFRAKPDTAMRSADDADLDEYLATIAVARILFGPSMRI
QAPPNLSEPDELRRLLAAGVDDWGGVSPLTPDHVNPERPWPEIERLRDLSAAAGFELRER
LAVQPQYVLAGERWVDARVRPHLLALADLETGLAADVLPEGRPWQDAAPGESSGRTDLHL
EIDTEGRRTDTRSDFANAFGDWTVLGEEMTARAGAGAPPRLGSEVLAALRAAERNPAGLS
DAEALALIHCEGPDLDALCVLADQVRQSTVGDAVTYVVNRNLNFSNVCYTGCRFCAFAQR
ASDADAYRLSIPEVGERVAQAWDVGATEICMQGGIDPGLPSTIHLDLAAETKRRSPQIHL
HAFSPMEIVSGASRMGISVAEWLTEARTAGLDSVPGTAAEILDDEVRWVLTKGKLPAAEW
IRVVKTAHELGIRTTATMMYGHVDEPRHWVGHFRVLLDIQKETGGFTEFVPLPFVHQSSP
IYLAGLARPGPTRRDNRAVHAMARLMLHGLIDNIQCSWVKLGSDECVELLRGGVNDLGGT
LMEETISRMAGSTNGSMKTIADITHMAGAAGRPARQRTTTYEDVDAERSAAAQRFDDQVR
TVLPLSVGMVAP
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgacgagtctgagccgcgcacttgcgcgggtgagttccgccaagacgatcgacgccggt
gaagccgaggcactcctgagtgcgcgaggcggcgacctcgaccgactgtgcgaggccgcc
gcggccgtccggtcggcaggcctgttcgacgccggacgccccggggtggtgacctacagc
cggaaagtgttcatcccgctcacccgtctgtgccgcgaccggtgccactactgcaccttc
gcgacgacgccgggacgggtcgacgaacccttcctgtcgcccgaccaggtgctggagatt
gcccgcgaaggcgcccggatgggctgcaaggaagcgcttttcacgctgggtgatcggccc
gaggaccgatgggacgccgcccgcgagtggctggagtcgcgcggctacgccgacacactg
tcctacgtacgagccatggcggtgctggtgctcgaggagaccggtctggtgccgcatctg
aacccgggaataatgtcctgggcggaactccagcgcctcaagccggtggccggttccatg
ggtctgatgctcgaatccactgcacgctcgctgtgggcggaacccgggggttgccactac
ggttccccggacaagaatcccgctgttcgcctggcgtgcatcgaggatgcgtcccgcacc
aacattcccttcacgaccggaatcctggtcgggatcggcgagtcgcacgccgaccgcgtg
gagtccatcctccagatccgccggatcgcaaggcagtacggcgccgtccaagaggtgatc
gtccagaattttcgcgcgaagccggacaccgcgatgcggtcggcggacgacgcggacctc
gacgagtacctggccacgatcgcagtggcccgtattttgttcggaccctcgatgcgtatc
caggccccgcccaacctgtcggagcccgacgaactgcgccggctgctggcggccggggtc
gacgactggggtggggtgtcgccactgacccccgaccacgtgaaccccgagcggccctgg
ccggagatcgagcgactccgtgacctgagtgctgccgccggtttcgagctccgggagcgc
ctcgccgtccagccgcaatacgtcctcgcgggggagcggtgggtggacgcccgcgtccgg
ccgcacctgctggcgctcgccgacctggagaccgggctggccgccgatgtgctgccggag
ggtcgaccgtggcaggatgccgcgcctggcgagtccagtggcagaaccgatctgcacctc
gagatcgatacggaagggcgccggacggatacccgcagtgacttcgcgaacgccttcggt
gactggaccgtgctcggtgaggaaatgacagcacgtgcgggggcaggcgcccctcctcgt
ctgggcagcgaggtactcgccgctttgcgtgcggccgagcggaatcccgccggtctcagt
gacgccgaggccctggcgctcattcattgcgagggcccagatctggatgccctgtgcgtg
ttggcagatcaggttcggcagtcgacagtgggcgacgcggtgacgtacgtcgtcaaccgg
aacctgaacttcagcaacgtctgctacaccggctgtcgtttctgtgcgttcgcgcaacgc
gcaagcgatgccgatgcgtaccggctctccatccccgaggtgggggagcgggtcgcccag
gcctgggatgtcggcgccaccgagatctgcatgcagggcggtatcgacccgggcctgccc
agcaccatccatctggacctggcggccgaaacgaaacgccggagcccgcagatccacctc
cacgcgttctcgcccatggagatcgtgagcggagcctcgcgcatgggcatctcggtggcc
gaatggctcaccgaggcacgcacagccgggctcgactccgtgccgggcaccgccgccgag
atcctggacgacgaggttcggtgggtgctgaccaaaggcaaactccccgcggccgaatgg
attcgggtcgtcaagaccgcgcacgagcttggaatccgcaccaccgccacgatgatgtac
ggccacgtggacgagccccggcattgggtcggccacttccgcgtcctgctcgacatccag
aaggagacaggcggcttcacggagttcgtcccgctgccgttcgtgcaccagagctcgccc
atctaccttgcagggctggcaaggccgggcccgacccgacgggacaaccgcgcagtccac
gcgatggcgcggctgatgttgcacggtctaatcgacaacatccagtgctcttgggtcaag
ctcggttcggacgaatgtgtggaactactccgcggcggggtcaacgacctcggcggcacc
ctgatggaagagaccatcagcaggatggccggttcgaccaatgggtcgatgaagaccatc
gcagacatcacccacatggccggcgcggcgggccggccggcccggcagcgcaccaccacc
tacgaggatgtcgacgccgaacgctccgctgcggcccaacgattcgacgaccaggtgagg
accgtgctgccactcagtgtggggatggtcgccccgtga

KEGG   Rhodococcus sp. JS3073: OYT95_40130
Entry
OYT95_40130       CDS       T10731                                 
Symbol
cofH
Name
(GenBank) 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH
  KO
K11779  FO synthase [EC:2.5.1.147 4.3.1.32]
Organism
rhjs  Rhodococcus sp. JS3073
Pathway
rhjs00680  Methane metabolism
rhjs01100  Metabolic pathways
rhjs01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:rhjs00001]
 09100 Metabolism
  09102 Energy metabolism
   00680 Methane metabolism
    OYT95_40130 (cofH)
Enzymes [BR:rhjs01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.147  5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase
     OYT95_40130 (cofH)
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.1  Ammonia-lyases
    4.3.1.32  7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase
     OYT95_40130 (cofH)
SSDB
Motif
Pfam: Radical_SAM CofH_C BATS
Other DBs
NCBI-ProteinID: WAM19852
LinkDB
Position
unnamed:473032..475491
AA seq 819 aa
MSLDIGTKSTIHRLGTTNVPSVDDATVLTLPLPELMERAAALRDALFGTRVTYSPKVFIP
LTTLCRDGCGYCTFSRSPARAEAPYLTPDQVLAIAMRGAQAGCHEALFTLGEQPEDRYDV
AAKWLADHGYGSTVEYLAAMCRLVTTETGLLAHSNAGALAPDALSLLRTVSPGQGMMIES
LNPTLMAHRGAPDKTPERRLATLEAAGELAIPFTTGILVGIGESAQDRVTALRAIADLHR
RYGHVQEVIVQNFMPKPDTVMRNEPACPQDEFLRTIAIARLILPLDVHLQAPPNLSEDFG
PLLDAGIDDFGGVSPVTVDHVNPERPWPSLDRLREVTEGHGKFLTPRLTVYPEFARRPDQ
WIDPGLRFAIMDRSDAESLGRDDPGAMFPESHTDAKNVGTGAEVVQIGRRSTVWSSGSEF
APTDLVPSRKRGFGGPVTDVLEGIASGQEPGVDEIVTLFGARGGEVAEVAEFADHLRSRA
VGDDVTFVRNRNINYTNVCTFKCTFCGFSKGPLSLNLRGKPYLLTLQEVAARVREAWDLG
CTEVCLQGGIHPSFDGDYYIDVCRAAKEAAPDIHVHGFTALEVTEGAKRLGEPLEKYLQR
LVDAGLKSLPGTAAEILDDDVRAILCPDKIDTEEWLECHRVAHSMGLTSNVTMMFGTVEE
PVHWARHFLRTRELQRETGGFTEFVGLPFVHMAAPIYLKRGARRGPTWREVVLVHAIARI
VYDGLIDNVQASWVKLGLDGVRQLLQAGVNDVGGTLMDENISRAAGAAHGQQLDETDLDA
VVQGIGRRLRRRTTNYLTPPTHQLDLRGGPTHSPEVILR
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgagtctcgatataggtacgaagtcaacaatccaccggctcggcaccacgaacgtaccg
tcggtcgatgacgcgaccgtcctcacccttcctcttccggagctgatggaacgggcagcc
gcactacgcgatgcgctcttcggcacgagggtgacgtactcgccgaaggtcttcatcccg
ttgaccacactgtgccgcgacgggtgtggctactgcacattctcccgctcacccgcacgc
gcggaggcgccctacctcacgcccgatcaggtgctcgcgatcgccatgcggggagcgcag
gcgggatgtcacgaggcgctgttcacgctgggggaacagcccgaagaccgatacgacgtc
gcggccaaatggctggccgatcacggctacggctccaccgtcgagtacctagccgcaatg
tgccggctagtgaccacggagacgggtttgctggcgcactccaacgccggagcccttgca
ccggatgctctgtcgctgctgcggactgtcagccccggccagggcatgatgatcgagtcg
ttgaacccgacgctgatggcccaccgcggtgcgcccgacaagacaccggaacgacggctg
gccacgctggaagccgcgggtgaactcgcgattcccttcacgaccgggatcctcgtcggc
atcggagagtctgcgcaggaccgtgtcacggcgctgcgggccatcgctgacctgcacaga
cgttacgggcacgttcaagaagtgatcgtgcagaacttcatgcccaaaccggacaccgtg
atgcgcaacgaaccagcctgcccgcaggacgagttcctccggacgatcgcgatagcgcgg
ttgatcttgccgctggatgtgcacctgcaggcccccccgaatctgtcggaagacttcggt
ccgctgctcgacgcggggatcgacgacttcggtggtgtgtccccggtgacggtcgaccac
gtcaacccggaacggccctggccctcgctcgaccggctccgggaggtgaccgaaggtcac
ggcaaattcctcacaccccgcctcaccgtgtaccccgagttcgcgcgccgccctgaccaa
tggatcgaccccggtctgcgcttcgcgatcatggaccggtcggacgccgagtcgctcggc
cgcgacgacccgggtgcgatgttccccgagagccacaccgatgcgaagaacgtcggcacc
ggggcggaagtcgtccagatcggtcgacgctcgacagtgtggagctccgggtcggagttc
gcgcccaccgatctggtgccgagccgcaagcgagggttcggcgggcccgtcacggacgtc
ctcgaaggtatcgcctcggggcaggaaccgggagtggacgagatcgtcaccctgttcgga
gctcgtgggggagaggtcgccgaggtcgccgagttcgccgatcacctccgctccagggcg
gtcggtgacgacgtgacattcgtgcggaaccgaaacatcaactacaccaatgtctgcacc
ttcaagtgcaccttctgcgggttctccaagggaccgttgtcgctgaacctgcgaggcaag
ccgtacctgctgacccttcaggaagtcgccgcccgtgtccgggaggcgtgggatctcggg
tgcaccgaggtctgcctgcagggcggcatccatccgtccttcgacggcgactactacatc
gacgtctgccgcgcggctaaggaagcagcgcccgatatccacgtgcacggcttcacagcc
ctcgaggtcaccgaaggagccaagcggctcggggagccgctcgagaagtacctacagcga
ttggtcgacgcaggactgaagtcgctcccgggcaccgccgcggaaatcctcgacgacgac
gtccgggcgatcctctgcccggacaagatcgacaccgaggagtggctcgaatgtcaccgc
gtcgcccactcgatgggcctgacgtcgaacgtgacgatgatgttcggaaccgtcgaggag
cccgtgcactgggcgcgccacttcctccgcacccgagaacttcagcgtgagaccggcggg
ttcaccgagttcgtcggtcttccgttcgtacacatggcggctccgatctacctcaagcga
ggtgcgcgccgtggtccgacctggcgagaagtagtgctggtccacgcgattgcgcgaatc
gtctacgacgggctgatcgacaacgtgcaggcgtcgtgggtcaagctcggactcgacggg
gttcgtcaactgctccaagcgggtgtgaacgacgtcggcgggacgttgatggacgagaac
atcagccgcgccgccggcgccgcccacggccagcaactcgacgagacagacctggacgcg
gtggtgcagggaatcggccggcgcctgcgacggcgcacgacgaactacctgacgcctccc
acccaccagctcgatctgcgcggtggaccgacacattcaccagaggtgatcctcagatga

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