Rhizobium sp. Kim5: Kim5_CH04470
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Entry
Kim5_CH04470 CDS
T05501
Symbol
gdhB
Name
(GenBank) NAD-specific glutamate dehydrogenase
KO
K15371
glutamate dehydrogenase [EC:
1.4.1.2
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk00220
Arginine biosynthesis
rhk00250
Alanine, aspartate and glutamate metabolism
rhk00430
Taurine and hypotaurine metabolism
rhk00910
Nitrogen metabolism
rhk01100
Metabolic pathways
rhk01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
Kim5_CH04470 (gdhB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
Kim5_CH04470 (gdhB)
00220 Arginine biosynthesis
Kim5_CH04470 (gdhB)
09106 Metabolism of other amino acids
00430 Taurine and hypotaurine metabolism
Kim5_CH04470 (gdhB)
Enzymes [BR:
rhk01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.1 With NAD+ or NADP+ as acceptor
1.4.1.2 glutamate dehydrogenase
Kim5_CH04470 (gdhB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Bac_GDH_CD
GDH_C
GDH_HM3
GDH_ACT2
GDH_HM1
GDH_ACT3
GDH_ACT1
ELFV_dehydrog
Motif
Other DBs
NCBI-ProteinID:
ARQ60457
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All DBs
Position
4529932..4534707
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AA seq
1591 aa
AA seq
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MAARNNPKREKQIEGARKVAKATGEARLDPEILFGRASNDDLERYTPEMLALSAVHSAKE
LAAWNGKTPRVSIDTIGGVAPDGIAVSVLSVTDRNMPFLYESVMGEVTSTHRDLFMAVHP
ILVMEKGKAPALYSADQPSDPATRVSHIQLHIAPLNSGQAADLVKRIQTVLEQVRLSVSD
WKPMLSKLDVVIAELSANGAGRRKAEHAEALAFLHWLRDENFTFLGMREYVYSGKGSDAK
VERDKGTGLGILSNPDVRVLRTGKDAVTTTPEILAFLDGPDFLIVTKANVKSIVHRRAYM
DYVGVKRFDAEGNVTGELRIVGLFTSTAYTSLASEIPLLRSKIEKVKEHFGFDPMSHSGR
MLDNTLESYPRDDLFQIDTTLLASFAEQINDLADRPRVRVLPRIDHFDRFVSVIVYVPRE
EYDSIVRERIGTYLKTVYDGRVSAYYPAFPEGGVARVHFIIGRSGGKTPRIPQAKLEQTI
REITARWDDRFEALAGPKAPKISVDQAFQDSFTPEETVADLADIGACAAGEPIRIQFYHR
QENQSRILSLKIFHAGGQLALSRRVPLLENLGFNVVSERTFDIGVPVADGQTKLVVLHDM
ELETRNGRDIDLQRYGAALEEAFVAAFAGTIDNDSFNRLILSAGLSARETNVLRAYARYL
RQAGIAYSQDYIATTLDKYPGVAAAIFRLFHDTLDPKLPEKARVKKLAELHQGIEAELAE
VPSLDDDRILRRYVNIVDATLRTNYFQKNPDGSPKSMLAFKLDPHLVDGLPQPKPFREMF
VYGVEVEGVHLRFGKVARGGLRWSDRAEDYRTEVLGLVKAQQVKNAVIVPVGAKGGFYPK
KLPLGGSRDEIFNAGREAYKTYIRTLLSITDNISGAEIVPPTDTVRLDGDDPYFVVAADK
GTATFSDTANALAQEAGFWLDDAFASGGSAGYDHKKMGITARGAWETVKRHFREMDIDIQ
TTPFTVAGVGDMSGDVFGNGMLLSPKIRLVAAFDHRDIIIDPDPDMEKTLAERQRLFDLP
RSSWQDFDKNMLSKGAMIISRAAKSVTLTPEAIAAIGIDKAVATPFEIMTAILKSPVDLL
WFGGIGTYVKASSETDTEVGDRANDPIRITAAEVRAKVIGEGANLGVTQKGRIAYGLRGG
RCNSDAIDNSAGVNTSDVEVNIKIALAAAMHDGRLTRAKRDQLLSSMTAEVAALVLRNNY
LQSLAISLTERKGTANGLELGRFMSVLEAAGQLNRKVETLPDDQTLAERYTAGKPLTRPE
IGVLVSYAKIVLFDALAASDLPDDPYFASTLSNYFPVKMQKSNADDIASHRLRREIIATV
LANEAINRGGPSFIVAMMDATAASAPEVVRAAIVARDGFDLTRLWAETDALDGKISGEMQ
NRIYEEISHSFIVLTRLLLKTAMTKADMAEVISRLQAALKKLRPAFAEQAAADAAARQAE
YVQAGVPEKLAAEIANLQSFALVPEIMQIAERTGEPLVRAAENYFAVSKTFRIARLLAAG
GRILTSDHYENLALARSIDQIASARRDIVISALFDHGKEKLPVQAWHAQDRVRINRIVEE
LSSLSDSGDPNLARITVAAGILTDLARDRAR
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atggctgccagaaacaatccgaaacgggaaaaacagatcgaaggcgcgcgtaaggtcgcc
aaggcgacgggcgaggcccgtctcgatccggaaattctcttcggccgggcaagcaatgac
gatctcgaacgctacacgcctgaaatgctggcgctttctgccgtgcattcggcaaaagaa
cttgccgcctggaacggcaagacgccgcgcgtcagtatcgacaccatcggcggtgtggcc
cctgacggcattgccgtctcggtgctttcggtgaccgaccggaatatgccgtttctctat
gaatcggtcatgggtgaagtgacgagtacccaccgcgatctcttcatggccgtgcatccc
atcctggtgatggaaaagggcaaggcgcctgcgctctattccgccgatcagccgagcgat
cccgccacacgcgtcagccatatccagctccatatcgccccgctgaattccggccaggcg
gccgatctcgtcaaacgcatccagaccgtgctcgaacaggtccgtctgtcggtctcggac
tggaagccgatgctttccaagctcgacgtggtaatcgccgagctttcggccaatggcgcc
ggccgcaggaaggccgaacacgccgaggcgctggcgttcctccactggctgcgcgacgag
aatttcaccttcctcggcatgcgcgaatatgtttattccggcaagggttccgatgccaag
gtcgagcgcgacaagggcacgggcctcggcatcctctccaatcccgatgttcgggtgctg
cgtaccggcaaggatgccgtgacgacgacgcctgagatcctcgccttcctcgacggcccc
gacttcctgatcgtcaccaaggcaaatgtgaaatcgatcgtccatcgccgcgcctatatg
gattatgtcggcgtcaagcgtttcgacgccgagggcaatgtcaccggcgaactgcgcatc
gtcggcctgttcacctcgacagcctatacgtcgctcgcctcggaaatcccgctgctgcgt
tccaagatcgaaaaggtgaaggagcatttcggcttcgacccgatgagccattccggccgc
atgcttgataacacgctggaatcctatccgcgcgatgatcttttccagatcgacacgaca
ctgcttgccagctttgccgagcagatcaacgatctggccgaccggccgcgcgtgcgcgtc
ctgccgcgcatcgaccatttcgaccgcttcgtctcggtgatcgtctatgtgccgcgcgag
gaatacgactcgatcgtgcgcgagcggattggcacctatctgaagaccgtctatgacggc
cgtgtctctgcctattatccggctttccccgaaggcggcgtggcgcgcgtgcatttcatc
atcggccgctccggcggcaagacgccccgcattccgcaggcgaagctcgagcagacgatc
cgtgaaatcaccgcccgctgggacgaccgtttcgaagcgctagccgggccgaaagcgccg
aaaatatcagtcgatcaggcctttcaggattccttcaccccggaggaaaccgtcgccgac
ctcgccgatatcggtgcctgcgccgccggcgagccgatccgcatccagttctatcatcgt
caggaaaaccagagccgcatcctctcgctgaagatcttccacgccggcggccagctggcg
ctgtcgcggcgtgtgccgcttctcgagaatctaggcttcaatgtcgtcagcgaacgcacc
ttcgatatcggagtgccggttgctgacggtcaaaccaaactcgtggtgctgcatgacatg
gagctcgagacccgcaacggccgcgacatcgacctgcagcgctatggcgccgccctcgag
gaagccttcgtcgccgcctttgccggcacgatcgacaatgacagcttcaaccggctgatc
ctttcggcggggctctcggcccgtgagaccaatgtgctgcgcgcctatgcgcgctacctc
cgccaggccggcatcgcctattcgcaggactatatcgcaacgacgctcgacaaatatccc
ggcgtcgccgccgccattttccggctgttccacgacacgctcgatcccaagctgccggag
aaggcccgcgtgaagaagcttgccgagctgcaccaggggatcgaggccgagctcgccgag
gtgccaagtctcgacgacgaccgcatactgcgccgctacgtcaacatcgtcgacgccacg
ctgcggaccaactatttccagaagaaccctgatggttcgccgaaatccatgctcgccttc
aagctcgatccgcacctggtcgacggactgccgcagccgaaacccttccgtgagatgttc
gtctacggcgtcgaggtggaaggcgtgcatctgcgcttcggcaaggtggcgcgcggcgga
ctgcgctggtcggaccgcgccgaggattaccgcaccgaggtgctcggcctcgtcaaggcg
cagcaggtaaagaacgccgtcattgtgccggtcggcgccaagggcggcttctacccgaaa
aagcttcccctcggcggcagccgcgacgagatcttcaatgccggccgcgaggcttacaag
acctatatccgcaccctgctttcgatcaccgacaatatctccggggccgagatcgtgccg
ccgacggatacggtgaggcttgacggcgacgacccgtatttcgtcgtcgccgccgacaag
ggcacggcaaccttttccgacaccgccaatgcgctggcgcaggaagccggcttttggctt
gacgacgccttcgcctccggcggctcggccggttacgaccacaagaagatgggcatcacc
gcccgcggcgcctgggaaactgtcaaacgccatttccgcgaaatggacatcgacatccag
acgacccccttcaccgtcgccggcgtcggcgacatgtcgggcgacgtcttcggcaacggc
atgctgctgtcgccgaagatccggctggtcgccgccttcgaccaccgcgacatcatcatc
gatcccgatcccgacatggaaaagacgctggcagaacgccagcggctcttcgacctgccg
cgctcgagctggcaggatttcgacaaaaacatgctttcgaaaggtgcgatgatcatttcc
cgcgcggcaaaatcggtgacgctgacgccggaagcgatcgcggcaatcggcatcgacaaa
gccgtggccacgccattcgagatcatgacggcgatcctgaaaagcccggtcgacctgctc
tggttcggcggtatcggcacctatgtgaaagcgtcctccgaaaccgataccgaggtcggc
gaccgcgccaacgatccgatccgcatcaccgcggcggaggtacgcgccaaggtgatcggc
gagggcgccaacctcggcgtcacgcaaaagggccgcattgcctatggcctcaggggcggg
cgctgcaattccgacgccatcgacaactcggccggcgtcaatacctcggacgtcgaggtc
aacatcaagatcgcgctggcggctgcgatgcatgacggacggctgacgcgggcgaaacgt
gatcagcttctttcgtcgatgaccgctgaagtggcggctctcgtgctgcgcaacaattat
ctccagtcgctggcgatctcgctgacggagcgcaagggtacggcaaatgggctggagctc
ggccgcttcatgagcgtgctcgaagccgccggccagctgaaccgcaaggtcgagaccttg
cccgacgaccagaccctcgccgaacgctatacggcgggcaagccgctgacgcggccggaa
atcggcgttctggtgtcctatgccaagatcgtgctcttcgacgcgctcgccgcaagcgat
ctgcccgacgacccctattttgcgtcgacgctgtcgaattatttcccggtcaaaatgcag
aagtcgaacgccgacgatatcgccagccaccgcctgcggcgtgaaatcatcgcgaccgtg
ctagccaacgaagcgatcaaccgcggcgggccgagctttatcgtagcgatgatggatgca
acggcggcttcggcgccggaagtggtgcgcgccgcaatcgtcgcgcgtgacggtttcgac
ctcacccgactctgggccgagacggatgcgctcgacggcaagatatcgggcgagatgcag
aaccgcatctacgaggaaatcagccacagctttattgttctcacgcgcctgctgttgaag
accgccatgaccaaggccgatatggccgaggtgattagccggctgcaggccgctcttaag
aagttgcggcctgcttttgcagaacaagcagccgccgatgctgccgcacgacaggcggaa
tacgtccaggcgggtgtgccagaaaagctcgctgccgagatcgccaacctccagagcttc
gcgctggtgccggagatcatgcagattgccgagcgcaccggcgagccgctggtgcgtgct
gcggaaaattatttcgcggtgtcgaagaccttccggatcgcccggctgcttgcggccggt
ggccggatcctcacctccgaccactacgaaaatctggcactcgcccgcagcatcgaccag
atcgccagcgcccggcgcgacatcgtcatttcggccctgttcgaccacggcaaggaaaag
ctgcccgtccaggcctggcatgcccaggatcgcgtccgcatcaaccgcatcgtcgaagag
ctttcgagcctcagcgacagcggcgatcccaatcttgcgcgcattaccgtggccgccggc
atcctgaccgatcttgcgcgcgaccgggcgaggtga
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