Rhizobium favelukesii: LPU83_2721
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Entry
LPU83_2721 CDS
T03046
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03030
DNA replication
rhl03410
Base excision repair
rhl03420
Nucleotide excision repair
rhl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPU83_2721 (ligA)
03410 Base excision repair
LPU83_2721 (ligA)
03420 Nucleotide excision repair
LPU83_2721 (ligA)
03430 Mismatch repair
LPU83_2721 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhl03032
]
LPU83_2721 (ligA)
03400 DNA repair and recombination proteins [BR:
rhl03400
]
LPU83_2721 (ligA)
Enzymes [BR:
rhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPU83_2721 (ligA)
DNA replication proteins [BR:
rhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPU83_2721 (ligA)
DNA repair and recombination proteins [BR:
rhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPU83_2721 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPU83_2721 (ligA)
MMR (mismatch excision repair)
DNA ligase
LPU83_2721 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPU83_2721 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_ligase
HHH
Lar_restr_allev
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CDM58373
UniProt:
W6RHV2
LinkDB
All DBs
Position
complement(2656406..2658577)
Genome browser
AA seq
723 aa
AA seq
DB search
MSTETIAVDALTIEDAAAELERLAMEIARNDELYHGEDRPAISDAEYDALKRRNDAIEAR
FPELIRDDSPSRRVGSAPSVTFAPLVHARPMLSLDNTFSQEDVQDFVASVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGKLVNAATRGDGTTGENVTANIRTIKEVPNELPRGVPAV
VEVRGEVYMAKSDFLALNKQMEAAGKQTYVNPRNTAAGSLRQLNAKVTASRKLKFFAYAW
GEISEPNDLPKAQFDMVQKFKEWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDG
VVYKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTMVENIDIQVGRTGALTPVARLTPI
TVGGVVVTNATLHNADYIEGIGNSGERIREVGHDIRIGDTVIVQRAGDVIPQVLDVVMEK
RPAEARPYEFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFICTAQATEHLKHFVSRNA
FDIEGLGSRQIDFFFDNEDSALQIRTAPDIFTLEKRQADSLTKLENIDGFGKVSVGKLYA
AINERRTIALHRFIYALGMRHVGETTAKLLARSYGTYDAFEAAMKEAAPLSGDAWNDLNA
IEGIGEIVARAIVEFYKEPRNIKVIGALLDELDDKRPLPAEQAVTSDSPVAGKTVVFTGS
LEKFSRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLAL
IGG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccgaaaccatagccgttgatgccctgacgatcgaagatgccgccgccgagctc
gagcggcttgcgatggagatcgcccgcaacgacgagctctatcacggcgaggatcgcccg
gcgatttcggatgccgagtatgatgcgctgaagcggcgcaacgacgcgatcgaggcgcgc
tttccggaactgatccgcgacgacagcccgtcgcggcgtgtcggctccgcgccttcagtc
acattcgcacccctcgtgcatgcgcggccgatgctgtcgctcgacaataccttctcgcag
gaggacgtgcaggacttcgtggccagcgtctatcgtttcctcggccgcttgccggaccag
tcgattgcctttacggcagagccgaaaatcgatggcctctccatgtcgatccgctacgag
aacggcaaacttgtaaacgcagcgactcgcggcgacggtacgacgggcgaaaacgtcacc
gcgaatatccgcaccatcaaggaagtcccgaacgagttgccccggggcgttccggccgtc
gttgaagtgcgcggcgaagtctatatggccaagagcgacttcctggcgctgaacaagcag
atggaggcggcgggcaagcagacctacgtcaatccgcgcaacaccgccgctggctcgctg
cgacagctcaatgcgaaagtgacagcgagccgcaagctgaagttcttcgcctacgcctgg
ggcgagatttccgagcccaatgatttgccgaaggcgcaattcgacatggtgcagaagttc
aaggaatggggctttcccgtcaatccgctgatgaagcggctgaactccgtcgccgatatc
ctggcgcattacgatgagatcggcctgaagcggcccgatctcgactacgacatcgacggc
gtcgtctacaaggtcgacagccttgagctgcaggcccgtcttggcttccgctcgcgcagc
ccgcgttgggcgaccgcacataaattcccggccgagcaggccttcacgatggtcgaaaat
atcgacatccaggttggccgcaccggcgctctgacgccggtcgcacgcctgacgccgatc
actgtcggcggcgtcgtcgttaccaatgcgacgctgcacaatgccgattatattgaaggc
atcggcaattcgggcgaacgtattcgcgaagtgggacacgacatccggatcggtgatacg
gtcatcgtgcagcgggcaggagatgtcatcccgcaggtgctcgacgtcgtcatggagaag
cgtccggccgaggccaggccttacgaattcccgaaaacttgcccggtctgcggcagccat
gcggtgcgtgagaagaacgagaagaccggcaagctcgattcggtcacccgctgcaccggc
ggcttcatctgcacggcgcaggcgacggagcatctcaagcatttcgtctcgcgcaatgcc
ttcgacatcgagggcctgggctccaggcaaatcgacttcttcttcgataatgaggacagc
gcgctgcagatccgcaccgcgcccgatatcttcacgctggagaagcggcaggcggattca
ctgaccaagctcgaaaatatcgacggcttcggcaaggtcagtgtcggcaagctctacgcc
gccatcaacgagcgccgcactatcgcgctccaccgcttcatctatgcgctcggcatgcgc
catgtcggcgagacaaccgcgaaactgcttgcgcgctcctatggcacctatgacgccttc
gaggcggcgatgaaggaggctgcaccactttccggcgatgcctggaacgacttgaacgct
atcgaaggcatcggtgagattgtcgcccgcgctatcgtcgaattctacaaggaaccgcgt
aatatcaaggtgatcggcgcgttgctggacgaactcgacgacaagaggccgttgcccgcc
gaacaggcggtgacatcagacagccctgtcgccggcaagaccgtcgttttcaccggctcg
ctggaaaagttttcgcgcgacgaggccaaggcgcgggccgaaagcctcggcgccaaggtc
gccggttcggtgtcgaagaagaccgatatcgtcgttgcgggaccgggcgccggctcgaag
ctcgacaaggcacgcgaactcggtgtccagacgatggacgaggacgagtggctggcgctg
attggcgggtga
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