KEGG   Rhizobium favelukesii: LPU83_pLPU83d0883
Entry
LPU83_pLPU83d0883 CDS       T03046                                 
Symbol
virD4
Name
(GenBank) component of type IV secretion system
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
rhl  Rhizobium favelukesii
Pathway
rhl03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:rhl00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    LPU83_pLPU83d0883 (virD4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rhl02044]
    LPU83_pLPU83d0883 (virD4)
Enzymes [BR:rhl01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     LPU83_pLPU83d0883 (virD4)
Secretion system [BR:rhl02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   LPU83_pLPU83d0883 (virD4)
SSDB
Motif
Pfam: T4SS-DNA_transf TrwB_AAD_bind TraG-D_C
LinkDB
Position
pLPU83d:complement(890330..892249)
AA seq 639 aa
MSRSYLSIYLLFCVLIAAAVWMMSYSLILLLVWKDGRILHLMTTTNPLAPIQQFVAYSNS
RPLRLVAIGSLGPAIFVAAAAAAFGLRRPANPLGDAAFQDMASLRRGGWFRKDGHVFGRV
GGKILRRKDDRHHLVIGPTRSGKGVGYVIPNALMHKGSMIVTDLKGEIFEHTAGYRAHSG
NGVYLFSPGSAKTHRWNPLDFVRTDRGSRTLDLQNMASILIPETMGSENAIWQGIAQQVI
AGVISYVLESPHYKNRCNLGEVNSFFNSGVDLQVLMKRIKEKEPDLSRFTTESFNAYIAL
NERAARSALLDIQKALAPFRNERVIAATNVTDIDLASLQRRPVTIYLAPNITDMTILRPL
LTLFVQQTMELLTREHNSSALPVYFLLDEFRQLKKMDEIMNKLPYVAGYNVKMAFIIQDL
KNLDEIYGETARHSLLGNCGLQLILGANDQATAEYSSRALGKRTIRYQSESRTLELMSLP
RRTKVEQIRERDLLMPQEVRQMPEDRFILLVEGQRPIFQTKLRYHVSEPFRSAAKYAAEH
PVDVPETEFAATLRVPAIAAGDETVSSLPPEGGQAHAPMSNMYTTTESAETGAKKVARSI
RARPRSSVSRKAKSKLISPEGALAGDRQAQVEEKLLPTV
NT seq 1920 nt   +upstreamnt  +downstreamnt
atgagccgatcttatctttcgatctatctgctgttctgcgtgctgatcgccgcagccgtc
tggatgatgagttacagcctgatcctgctgcttgtctggaaggatggtcgaattctgcat
ttgatgacgaccaccaatcccttggcgccaatccagcaattcgtcgcctactcgaacagc
cggccgttgcgactggtggcaatcggatctttgggtccagcgattttcgtcgcagctgct
gcggccgcattcggactgcgtcgtcccgcaaacccgctgggagatgccgcatttcaggac
atggcgtcgctgcgacgtgggggctggtttcggaaggatggacatgtcttcggccgcgtc
ggaggcaaaattcttcgccgcaaggatgaccgccatcatctggtaatcggcccaacacgc
tccggcaagggtgtcggttatgtcattccaaatgctctgatgcacaagggctcgatgatc
gtcacggatttgaaaggcgaaatattcgagcacaccgccggctaccgggcgcacagcggt
aacggcgtctacctgttctcgccgggatcggccaagacgcaccgctggaacccgctggat
tttgtgcggaccgatcgtggtagccgcacgctcgacctgcagaacatggcaagtatcctc
attcccgaaacaatgggctcggaaaacgccatctggcaagggattgctcagcaggtgatt
gcgggcgtcatcagttacgtgttggaaagcccgcactacaagaaccgctgcaacctcggc
gaagtcaacagcttcttcaactcaggcgtcgatctgcaggtcctgatgaagcggatcaag
gagaaggagcccgatctctccaggttcacgaccgagagcttcaatgcctatatcgctctg
aatgagagagcggcacgttctgcccttctggatattcaaaaggctctggcaccgtttcgc
aacgagcgcgttatcgccgctaccaacgtgaccgacatcgacctggcgtcccttcagcgg
cggccggtcacgatctacctggcgccgaatatcactgacatgacgatcctgagacccttg
ctgacgctcttcgtgcagcagaccatggagctgctcacccgcgagcataactcgagcgcc
cttcccgtctatttcctgctcgacgaattccgccagctgaagaagatggacgagatcatg
aacaagctgccctatgtggccggctacaacgtcaagatggccttcatcattcaggacctt
aaaaacctcgatgagatctacggagaaactgcgcggcactcgcttctcggcaattgcggc
ctgcagctcattctcggcgctaatgatcaggctaccgccgaatattcctcacgggcgctt
ggcaagcgtaccattcgctaccaatcggaatcccggacactggaactgatgagccttccc
cgtcgcaccaaggtcgagcagatacgtgagcgcgacttgctgatgccgcaggaggttcgg
cagatgccggaagatcgcttcatcctgttggtcgagggtcagcgtccgatcttccaaaca
aagcttcgctatcacgtgagcgaaccattcaggagtgctgcgaaatatgccgcggaacat
cccgtcgacgttccggaaacggagttcgccgcgacccttcgggttcccgccatcgcagcg
ggagatgagaccgtgtcaagtctccctcccgagggaggtcaagcgcacgccccaatgtca
aacatgtacacgacaactgagagtgcggagacaggcgcgaagaaggtagcgcgcagcatc
cgggcaagaccaagatccagcgtaagtcggaaagcgaaatcgaagctgatatcgcccgaa
ggtgcactggccggcgatcggcaggcgcaagtcgaagaaaagttgttgccgacagtttga

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