KEGG   Rhodovulum sp. MB263: B5V46_09550
Entry
B5V46_09550       CDS       T04771                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rhm  Rhodovulum sp. MB263
Pathway
rhm03030  DNA replication
rhm03410  Base excision repair
rhm03420  Nucleotide excision repair
rhm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rhm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B5V46_09550
   03410 Base excision repair
    B5V46_09550
   03420 Nucleotide excision repair
    B5V46_09550
   03430 Mismatch repair
    B5V46_09550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhm03032]
    B5V46_09550
   03400 DNA repair and recombination proteins [BR:rhm03400]
    B5V46_09550
Enzymes [BR:rhm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B5V46_09550
DNA replication proteins [BR:rhm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B5V46_09550
DNA repair and recombination proteins [BR:rhm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B5V46_09550
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B5V46_09550
   MMR (mismatch excision repair)
    DNA ligase
     B5V46_09550
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B5V46_09550
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD HHH_5 PTCB-BRCT Transposase_20 Nlig-Ia
Other DBs
NCBI-ProteinID: ARC88842
LinkDB
Position
complement(2049835..2051955)
AA seq 706 aa
MTDERPVETLSESEARAELARLAEAIVRADAAYHQEDAPTLSDAAYDGLKRRNAAIEARF
PALKRPDSPSDRVGAAPAEGFAKVAHVRRMLSLANAFDSTDVAEFDARIRRYLGLADDAA
LLYTAEPKIDGLSLSLRYEGGRLVQAATRGDGEVGENVTANARTIADIPATLTGAPDILE
VRGEVYMAHADFEALNARQTGAGARTFANPRNAAAGSLRQLDPSVTASRPLKFFAYAWGE
VSVPLATTQMEAIGRLKTLGFQVNPLTVLCDGPEALAAHYAGIEQRRATLGYDIDGVVYK
VNELALQERLGFRATTPRWAIAHKFPAELAWTRLDRIEIQVGRTGALSPVARLHPVTVGG
VVVSNATLHNEDYIAGRDSKGNEIRGGKDIREGDWVQVYRAGDVIPKVADVDLAKRPEGT
APYRFPETCPQCGSEAIREEGDAVRRCSGGLICPAQAVERLKHFVSRGAFDIEGLGAKQV
EALYKDGWIREPADIFELEARYGEGLQQLKNREGWGEKSATNLFTAIETRRTIPLDRLIF
ALGIRHLGEAAADLLARNFQTWEAFEAAVTHATAGEGPEWEALLSIDGVGTVMATSLITA
FHQEAERASIDRLVAHLTVAPVAPRAAVDSPVAGKTVVFTGTLEKMSRAEAKARAEALGA
KVAGSVSKKTDLVVLGPGAGSKAKKAGELGIETVDEDGWLALIEGA
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgaccgacgaacgtccagtcgaaacgctgtcggagagcgaagcgcgggcagagctggcc
cggctggccgaggccattgtcagggccgatgccgcctatcaccaggaagacgcgcccacg
ctgtcggacgcagcctatgatgggctcaagcgtcgcaatgcggccatcgaggcccgattc
ccggcgctcaagcgtcctgacagcccgtcggaccgggtcggggccgcccccgcagagggc
ttcgccaaggtcgcgcatgtccggcgcatgctgtcactggccaacgccttcgacagcacg
gatgtggccgagttcgatgcccgtatccgccgctatctgggccttgccgatgacgcggca
ctcctctacacggccgagcccaagatcgacgggctctcgctgtccctgcgctatgaaggc
ggtcggctggttcaggcggcgacccggggcgatggcgaggtcggcgagaatgtcaccgcc
aatgcccgcaccatcgccgacatcccggcgacactgacgggcgctcccgacatcctcgag
gtccgcggcgaggtctatatggcccatgccgatttcgaggcgctgaacgcgcgtcagacc
ggggccggggccaggaccttcgccaacccgcgcaatgccgcagccggctcgttgcgccag
ctcgacccctccgtcaccgcctcccggccgctgaaattcttcgcctatgcctggggcgag
gtctcggtgcccctggccacgacccagatggaggcgatcgggcggctgaaaacgctgggc
tttcaggtcaatccgctgacggtgctctgcgatggccccgaggcactggccgcacattac
gccgggatcgaacagcgccgcgcgacgctgggctatgacatcgatggcgtggtctacaag
gtgaacgagcttgccttgcaggagcggctgggcttccgcgcgaccacgccccgctgggcc
atcgcccacaaattccccgccgagcttgcctggacccggctcgaccggatcgagatccag
gtcggccgcaccggggcgctgtcgccggtggcgcggctccatccggtgacggtgggcggc
gtcgtggtctcgaacgcgacgctccataacgaggattacatcgcgggccgcgattcgaag
ggcaacgagatccggggcggcaaggacatccgcgagggcgactgggtgcaggtctatcgc
gcgggcgacgtgatcccgaaggtggccgatgtcgatctcgcgaaacgccccgagggcacg
gcgccctaccgctttcccgaaacctgcccgcaatgcggctcggaggcgatccgcgaagag
ggcgatgcggtccggcgctgttcgggcggactgatctgtccggcccaggcggtcgagcgg
ctcaagcatttcgtcagccgtggcgccttcgacatcgaggggctgggcgcgaaacaggtc
gaggcgctttacaaggatggctggatcagggagcccgccgacatcttcgagcttgaggcg
cgttacggcgaaggcctgcagcagttgaagaaccgcgagggctggggcgagaaatcagcc
acgaacctctttacggcaatcgaaacgcggcggacgatcccgctcgaccggctgatcttc
gcgctcggcattcgccatctgggcgaggccgcggccgaccttctggcccgcaacttccag
acatgggaggccttcgaggcggcggtcacccatgccaccgccggcgagggcccggaatgg
gaggcgcttttgtccattgacggggtcggcacggtgatggctacctcgctgatcaccgct
ttccatcaggaggccgagcgtgcctcgatcgaccggctggtcgcgcatctgacggtcgcg
ccggtggcgcctagggcggccgtcgacagcccggtcgcgggcaagaccgtggtctttacc
ggcacgctcgagaagatgagccgggccgaggccaaggcgcgggccgaggcgctgggggcc
aaggtcgcgggctcggtctcgaagaagacagatcttgtcgtgctgggccccggggccggc
tcgaaggcgaagaaggccggggaactggggatcgagaccgtcgacgaggacggctggctg
gcgctgatcgagggcgcatga

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