Rhodococcus sp. NyZ502: ACBG85_11515
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Entry
ACBG85_11515 CDS
T11460
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhny Rhodococcus sp. NyZ502
Pathway
rhny03030
DNA replication
rhny03410
Base excision repair
rhny03420
Nucleotide excision repair
rhny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACBG85_11515 (ligA)
03410 Base excision repair
ACBG85_11515 (ligA)
03420 Nucleotide excision repair
ACBG85_11515 (ligA)
03430 Mismatch repair
ACBG85_11515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhny03032
]
ACBG85_11515 (ligA)
03400 DNA repair and recombination proteins [BR:
rhny03400
]
ACBG85_11515 (ligA)
Enzymes [BR:
rhny01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACBG85_11515 (ligA)
DNA replication proteins [BR:
rhny03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACBG85_11515 (ligA)
DNA repair and recombination proteins [BR:
rhny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACBG85_11515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACBG85_11515 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACBG85_11515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACBG85_11515 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
XEU12465
LinkDB
All DBs
Position
2459657..2461738
Genome browser
AA seq
693 aa
AA seq
DB search
MQPAPNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDLRTPD
SPTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKVEQETGPELHYLCEVKIDG
VALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLLEVRGEVF
FRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFGRMEGFEP
ASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVVKVDEMSL
HRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVAGSTVSLA
TLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREFVMPTHCPECGTLLA
PAKEGDVDVRCPNQQYCPAQLRERVFHVSGRGAFDIEVLGYEAATGLLEAKVIGDEGDLF
SLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKDKPLWRVLVALSIRHVGPTAARALA
GEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWFSVDWHQQIVDKWASAGVRMEDERDN
SIPRNLEGLSIVVTGSLETYSRDQAKEAILVRGGKAAGSVSKKTAFVVVGEAPGSKHDKA
VELGVPVLDEDGFRRLLEDGPDAVAPTDLDEPE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcagccagcgcccaacgaggcgcgcgagcagtggacggagctggccgaagaggtacgc
cagcatcagttccgctactacgttcgtgatgcgcccgtcatttcggacggtgcattcgac
acattgctcgggcagctcaatgctctcgaagagcagtacccggatctgcgaactcccgac
tctccgacgcaactcgtcggtggcggattcgcgacggacttcacgtccgtcgaccacctc
gagcggatgctcagcctcgacaacgtcttcgacgagtcggagctccgagcatggatcgcc
aaggtagagcaggaaaccgggccggaactgcactatctctgtgaagtgaaaatcgatggt
gtcgccctcaatctcgtctacgagaacggcaaactcgttcgtgccgcaacccgcggtgac
ggtcgtacgggcgagctggtcacgctcaacgctctgacgatcaacgacatcccggagcgc
cttaccgccacggacgagtacccgattccgagcctgctcgaggtgcgtggcgaggtgttc
ttccgcctcgaggacttcgcagcactcaatgcctccctggtggaggaggggaaggcgccg
ttcgccaatccgcgcaactccgcggcgggctccctgcgtcagaagaatcctgccgtcacc
gcgcgtcgccgcctcggaatgatctgccacgggttcgggcgcatggaaggtttcgagccg
gcctcgcagtacgacgcctacgtggccctcgccgcctggggtctgccggtgtccacgcac
acctcacgggtggtcggcgccgacgccgtggtcgagaagatgaagtactggggagaacac
cgccacgacgtcgagcacgagatcgacgggttggtggtcaaggtcgacgagatgtcgtta
catcgacgtctgggcaccacgtcgcgcgcaccacggtgggctatcgcgtacaagtacccg
ccggaagaggtcacgaccaagctcctcgacatccgggtcagtgtcggacgtacgggtcgt
gtgacgccgttcgcgtacatggaacccgtcacggtggcgggttccactgtgtccttggcc
acgctgcacaacggctcggaggtcaagcgcaagggtgtgctgatcggcgacaccgtggtg
ttgcgcaaggccggagacgtcatccccgaggttctcggtcccgtggcagacgttcgtgac
ggtaccgagcgcgagttcgtcatgccgacacattgtcccgagtgcggcacgttgttggca
cccgcgaaagagggcgacgtcgacgtgcgatgccccaatcagcagtactgcccggcgcag
ttgcgcgagcgcgtgttccacgtctcggggcgcggtgcattcgacatcgaggtgctcggt
tacgaggccgcgaccgggctgttggaggcgaaggtcatcggcgacgagggcgatctcttc
tcactcgacgccgagaaactgatcgaagttccgatcttccgcaccaatgcgggatccctg
tccgccaacggaaaacgcttgctggccaacctggattcggccaaggacaagccgctgtgg
agagtgcttgtggcactgtcgattcggcacgtcggccccactgccgcgagggcgttggcc
ggcgaattcggctcgctgcaacgcattcgggaagcctcggtcgacgagttggctgcagtg
gacggcgtcggatcgactatcgccgccgccgtcgtggagtggttctccgtcgactggcat
cagcagatcgtcgacaagtgggcgtcggccggagtacgcatggaggacgaacgcgacaat
tcgattccgcgcaatctcgagggcctctcgatcgtcgtcaccggttcgctcgagacctac
tcacgtgatcaggcgaaggaagcgattctggtgcgcggcggcaaggcggcagggtcggtc
tcgaagaagactgcgtttgtcgtcgtcggtgaagcacccggttccaagcacgacaaggcg
gtcgaattgggtgtgccggtgctcgacgaagacggctttcggcggttgctcgaagatggc
ccggatgcggtcgctcccaccgatttggacgaaccagagtga
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