Rhodoferax sp. AJA081-3: HZ993_03565
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Entry
HZ993_03565 CDS
T08330
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhoa
Rhodoferax sp. AJA081-3
Pathway
rhoa03030
DNA replication
rhoa03410
Base excision repair
rhoa03420
Nucleotide excision repair
rhoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZ993_03565 (ligA)
03410 Base excision repair
HZ993_03565 (ligA)
03420 Nucleotide excision repair
HZ993_03565 (ligA)
03430 Mismatch repair
HZ993_03565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhoa03032
]
HZ993_03565 (ligA)
03400 DNA repair and recombination proteins [BR:
rhoa03400
]
HZ993_03565 (ligA)
Enzymes [BR:
rhoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZ993_03565 (ligA)
DNA replication proteins [BR:
rhoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZ993_03565 (ligA)
DNA repair and recombination proteins [BR:
rhoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZ993_03565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZ993_03565 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZ993_03565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZ993_03565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
DUF4796_N
Zn_ribbon_NUD
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QTN28934
LinkDB
All DBs
Position
complement(763998..766067)
Genome browser
AA seq
689 aa
AA seq
DB search
MANHPDRARLQTLHETLHRYAHQYYVLDEPTVPDAEYDRLFQELQALEAAHPEWVTPDSP
TQRVGGKPLDQFASVRHAVPMLSIRTETDTEASGAQNFDARVRKELVLAETDPPVEYVAE
LKFDGLAMNLRYEQGVLVQAATRGDGETGEDVTQNIRTIGQIPLRLSTEAPAVLEVRGEV
YMRRDDFEALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAAQRPLSFFAYGLG
EVTPVEQGGPAFGTHYDMLQTLKHWGFPVAALVAIANGAPELVAYHQRIGQTRDQLPFDI
DGVVYKVNSLALQQRLGFVSREPRWAVAHKYPAQEQMTTVLGIDIQVGRTGKLTPVAKLA
PVFVGGVTVTNATLHNEDEARRKDVRIGDTVVVRRAGDVIPEVVSVVLPAETVERGAEFT
MPRICPVCGSAAVREEGEADYRCTGGLFCSAQRKQAILHFAHRRAVEVEGLGDKLVEQMV
DAGIVKTLPDLYRLGFTALAALDRMAEKSAQNIVDALEKSKQTTLPRFLFGLGIRHVGES
TAKALARHFGKLDAIMDATVEQLLEVADVGPIVAESIHTFFAQAHNREVVEQLRACGLTW
EEGEPAVQVPKPLTGKTFVLTGTFPTLGRDQAKDLLEAAGAKVSGSVSKKTDYVVAGAEA
GSKLEKAQMLGVAVIDEAAMLALLQAPPQ
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccaccccgaccgcgcgcgcctgcagacgctgcacgagaccctgcaccgttac
gcccaccagtactatgtgctggacgaacctacggtgcccgatgccgaatacgaccggctg
ttccaggagctgcaggccctggaggcggcacacccggagtgggtaacgcccgattcaccg
acccagcgcgtgggcggcaagccgctggaccagtttgcatcggtacgccacgccgtgccc
atgctcagcatccgcaccgagactgacactgaggccagtggcgcgcagaattttgatgcc
cgtgtccgcaaggaactggttctggccgagaccgatccgcccgtggaatacgtggccgag
ctcaagttcgacggcctggcgatgaacctgcgctacgagcagggtgtgctggtgcaggcc
gcgacgcggggtgacggcgaaacgggtgaagacgtgacgcaaaatattcgcaccattggc
cagattccacttcggttatctaccgaggcacccgccgtgctggaggtgcgcggcgaggtc
tatatgcgccgtgatgactttgaggccctgaatgagcgccaacgcgcacgcattgccgca
ggtgaaaagggcgaaaaaacctttgtgaacccgcgcaatgcagcggccggtgccgtacgc
cagctagaccccggcattgcagcccagcgccccttgagtttttttgcctatggcctgggt
gaggtcacgccggtagagcagggcggcccggcattcggcacgcattacgacatgctgcag
accttgaagcattggggatttccggttgcagccctcgtcgctattgcgaatggtgctcct
gaattggtagcgtaccaccagcgcattggccaaacccgggaccagcttccgtttgatatc
gacggcgtggtttacaaggtcaacagcctggccctgcagcagcgcctgggttttgtcagc
cgtgaaccgcgttgggccgtagcccacaagtacccggcgcaagagcagatgaccaccgtg
ctgggcatagatatacaagtgggccgcacgggcaagctgacgcccgtggccaagctggcg
ccggtgtttgtgggcggcgttaccgttaccaatgccacgctgcacaacgaagacgaggcc
cgccgcaaggacgtgcgtattggcgataccgtggtggtgcgccgcgctggtgatgtcatt
cccgaggtggtcagtgtggtgttgcccgccgagacggtggagcggggcgcggaattcacg
atgccacgtatctgcccggtctgtggctcggcggccgtgcgcgaagagggcgaggccgac
taccgctgcaccggcggcctgttctgcagtgcccagcgcaagcaggccatcctgcatttc
gcgcaccgccgcgcggtcgaggtcgaaggcctgggggacaagctggtcgagcaaatggtg
gacgccggtattgtcaagacattgccggatttgtaccgtttgggtttcaccgcattggcg
gccctggaccgtatggctgagaagtccgcgcagaacattgttgacgcgctggagaagtcc
aaacaaacgaccctgccacgcttcttgttcggcttgggcattcgccacgtgggtgagtcc
acggccaaggcgctggcccggcatttcggcaagctcgacgccatcatggacgccacggtg
gagcagttgctcgaagtggctgacgtagggcccatcgttgccgaaagtattcacaccttc
tttgcgcaggcccacaaccgtgaggtggtggagcaactgcgcgcctgcggcctgacgtgg
gaagaaggcgaacccgcggtgcaggtgcctaagcccctgaccggcaaaacctttgtgttg
accggcaccttcccgacactgggtcgcgatcaggccaaggatttgctcgaagccgctggc
gccaaggtgtcgggctcggtcagcaaaaagactgactacgtggtggccggtgccgaggcg
ggcagcaagctggaaaaagcacagatgctgggtgtggcggtgattgacgaagcggccatg
ctggccttgctgcaggcgccaccacagtga
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