Rhodopseudomonas sp. P1: LRC39_18050
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Entry
LRC39_18050 CDS
T11217
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhoe Rhodopseudomonas sp. P1
Pathway
rhoe03030
DNA replication
rhoe03410
Base excision repair
rhoe03420
Nucleotide excision repair
rhoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRC39_18050 (ligA)
03410 Base excision repair
LRC39_18050 (ligA)
03420 Nucleotide excision repair
LRC39_18050 (ligA)
03430 Mismatch repair
LRC39_18050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhoe03032
]
LRC39_18050 (ligA)
03400 DNA repair and recombination proteins [BR:
rhoe03400
]
LRC39_18050 (ligA)
Enzymes [BR:
rhoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LRC39_18050 (ligA)
DNA replication proteins [BR:
rhoe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRC39_18050 (ligA)
DNA repair and recombination proteins [BR:
rhoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LRC39_18050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRC39_18050 (ligA)
MMR (mismatch excision repair)
DNA ligase
LRC39_18050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRC39_18050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Ribosomal_L37ae
Motif
Other DBs
NCBI-ProteinID:
XAT72154
LinkDB
All DBs
Position
complement(3899189..3901336)
Genome browser
AA seq
715 aa
AA seq
DB search
MAAKTKPAPDIATLTKAKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAI
EQKFPELVSASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVAEFALRVQRFLKLD
DVPAIVAEPKIDGLSLSLRYENGELVRAATRGDGFTGEDVTANVRTIKDVPNTLKGKHIP
AACELRGEVYMLKQDFLALNKRQEEMGETVFANPRNSAAGSLRQKDVAVTASRPLKFFAY
AWGEMSDYPMEEPTQHKMLQWLDHAGFVVNPEITLCHSVEDALAFYRRIGEKRASLPYDI
DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGAMTPVARLQ
PVTVGGVVVQNATLHNEDYIKGIGNDGEPIRDGVDIREGDTVVVQRAGDVIPQIVSVVME
KRPDTTKPYHFPHKCPVCGSHAVREEGEAVWRCTGALICPAQAVERLKHFVSRLAFDIDG
LGEKQIELFHERGWVTEPADIFTLKARNAELKIEELEGYGETSVRNLFAAIDARRTIELH
RLIFALGIRHVGEGNAKLLARHYGTLEAFLTAMRAAADAQTEEGNTSEAYQDLDNIAGIG
DVVAEAVVEFFAEERNIKALDALLVELTEVLPAEQARRDTAVAGKTVVFTGSLSKFTRDE
AKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVTVLTEDEWLALIGG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaagaccaaacccgcccccgacatcgccaccctcaccaaagccaaggccaag
gtggagctgatgcgattgcgcctcgagatcgaggggcatgacaaggcatactatcaggac
gacgcgccgaagatttcggacgctgactacgacgcgttgcggcggcggctggaggcaatc
gagcagaagtttcccgagctggtcagcgcctcgtcaccgacccagaccgtcggcgcggcg
ccggcccgcggcttcgccaaggtgcagcatgcggtgccgatgctgtcgctcggcaacgcg
tttgccgatgacgaagtcgccgagttcgccctgcgggtgcagcgctttctcaagctcgac
gacgtgccggcgatcgttgccgagccgaagatcgacggcctgtcgctgtcgctgcgctac
gagaacggcgagctggtacgcgcggcgacgcgcggcgatggcttcaccggcgaggacgtc
accgccaacgtccgcaccatcaaggacgtgccgaacacgctgaagggcaagcacatcccc
gccgcctgcgagctgcgcggcgaagtctatatgctgaagcaagatttccttgcgctgaac
aagcgtcaggaggagatgggcgaaaccgtattcgccaatccgcgcaactccgccgctggc
tcgttgcggcagaaggacgtggcggtcaccgcgtcgcggccgctgaagttcttcgcctat
gcgtggggcgagatgagcgactatccgatggaggagccgacccagcacaagatgctgcag
tggctcgatcacgccggctttgtcgtcaatcccgagatcacgctgtgtcacagcgtcgag
gacgcgctcgcgttctatcgccggatcggcgagaaacgcgcgtcgctgccgtatgacatc
gacggcgtggtctataaagtcgaccgtctcgactatcaggaacgtctcggcttcgtgtcg
cgcagcccgcgctgggcgatcgcgcataagtttgccgccgagcaggcgacgactgtgctg
gagaagatcgacatccaggtcggccgcaccggcgcgatgacgccggtggcgcggctgcag
ccggtgacggtgggcggcgtggtggtacagaacgcgacgctgcacaatgaggactacatc
aagggcatcggcaatgatggcgagccgatccgcgatggcgtcgacatccgcgaaggcgac
accgtggtggtgcagcgcgccggcgatgtgatcccgcagatcgtcagcgtggtgatggag
aagcggccggatacgacgaagccgtatcacttcccgcacaaatgcccggtgtgcggcagc
cacgcggtgcgcgaggagggcgaggcggtatggcgctgcaccggggcgctgatctgcccg
gcgcaggcagtcgagcgtctgaagcatttcgtgtcgcggctggcgttcgacatcgacggt
cttggcgagaagcagatcgagctgttccacgagcgtggctgggtcacggagcccgccgac
atcttcacgctgaaagcccgcaacgccgagctgaagatcgaggagctggaaggctatggc
gaaacctcggtgcgcaatctgttcgccgcgatcgatgcgcggcggacgatcgaactgcac
cgcctgatcttcgcgctcggcatccgccatgtcggcgagggcaacgccaagctgctggcg
cggcactacggcacgctggaagcgtttctgactgccatgcgcgcagccgccgacgcgcag
accgaggagggcaacacctcggaggcgtatcaggatctcgacaacattgccgggatcggc
gacgtcgttgccgaagcggtggtcgagttcttcgccgaagagcgcaacatcaaggcgctc
gatgcgctgctggtcgaactcaccgaagtgctgccggccgagcaggcacggcgcgacact
gcggtcgccggcaagaccgtggtgttcaccggctcgctgtcgaaattcacccgcgacgaa
gccaaggccgcggcggagcggctcggcgccaaggttgccggctcggtgtcgaagaagacc
gactacgtggtcgccggcgaagacgccggatcgaaactgaccaaggcgaaagacctcggc
gtcacggtgctgaccgaagacgagtggctggcgctgatcggcgggtag
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