Rhodopseudomonas sp. BAL398: RBJ75_02015
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Entry
RBJ75_02015 CDS
T10316
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhol Rhodopseudomonas sp. BAL398
Pathway
rhol03030
DNA replication
rhol03410
Base excision repair
rhol03420
Nucleotide excision repair
rhol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBJ75_02015 (ligA)
03410 Base excision repair
RBJ75_02015 (ligA)
03420 Nucleotide excision repair
RBJ75_02015 (ligA)
03430 Mismatch repair
RBJ75_02015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhol03032
]
RBJ75_02015 (ligA)
03400 DNA repair and recombination proteins [BR:
rhol03400
]
RBJ75_02015 (ligA)
Enzymes [BR:
rhol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBJ75_02015 (ligA)
DNA replication proteins [BR:
rhol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBJ75_02015 (ligA)
DNA repair and recombination proteins [BR:
rhol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBJ75_02015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBJ75_02015 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBJ75_02015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBJ75_02015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DZR_2
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WOK18327
LinkDB
All DBs
Position
435809..437962
Genome browser
AA seq
717 aa
AA seq
DB search
MTAKSKRAPADIATLTKAKAKVELRRLALELEGHDKAYYQDDAPKISDADYDALRRRVEA
IEEKFPELVSGDSPTQKVGAAPSRAFAKVQHEVPMLSLGNAFSDDEVAEFVERVQRFLRL
DQVPELVAEPKIDGLSLSLRYERGDLVRAATRGDGFVGEDVTANVRTIDDIPNKLEGNAI
PAACELRGEVYMLKSDFLALNQRQEQAGDPPFANPRNSAAGSLRQKDVSVTASRPLKFFA
YAWGEMSDYPMKEPTQHGMLDWLKQVGFTVNPLITLCHSVDDALAFYRRIGEQRAGLGYD
IDGVVYKVDRIDWQARLGFVSRSPRWAIAHKFAAEQAMTVLEKIDIQVGRTGALTPVARL
APVTVGGVVVQNATLHNEDYIKGVGNDGVAIRDGVDIREGDTVVIQRAGDVIPQIVSVVL
DKRPKDAKPYAFPQRCPVCGSHAVREDGEVVRRCTGALICPAQAVERLKHFVSRLAFDID
GLGDKQIQEFYDDGLIMHPVDIFTLQKRDARASKQLRDREGFGETSVRNLFAAIDARRRI
ELHRLIFALGIRHVGEGNAKLLARHYGTFDAFRDAMLAAASGQSEEGNSSEAYTDLNNIG
GVGEIVADAVVEFFAEQRNVKALGELLDEIEVLPAEQVKRDTAIAGKTVVFTGSLTKFTR
DEAKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKAKDLGVAVLTEDEWLKLIEG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaaatccaagcgcgcccccgccgacatcgccaccctcaccaaggccaaagcc
aaggtcgagctgaggcggctggcgctcgagctcgagggccacgacaaggcttactatcag
gacgacgcgccgaagatttccgacgccgattacgacgcgctgcgccgtcgcgtggaagcg
atcgaggaaaagtttcccgagctggtgagcggggattcgccgacccagaaggttggcgct
gcgccgtcgcgggcctttgccaaggtgcagcatgaggtgccgatgctgtcgctcggcaat
gcgttcagcgacgacgaggtcgccgaattcgtcgagcgcgtgcagcgcttcctcaggctc
gatcaggttccggagctggtcgctgagccgaagatcgacgggctgtcgctgtcgctgcgt
tatgagcgtggcgatttggtgcgcgccgccacccgcggcgacggctttgtcggcgaggac
gtcaccgccaatgtccgcaccatcgacgacattccgaacaagctggagggcaacgccatc
cccgccgcctgcgaattgcgcggcgaggtctatatgctcaagagcgatttcctggcgctc
aaccagcggcaggagcaggccggcgatccgcccttcgccaatccgcgcaattccgccgcc
ggctcgctgcggcagaaggatgtctcggtcaccgcgtcacggccgttgaaattcttcgcc
tatgcgtggggcgagatgagcgactatccgatgaaggagccgacccagcacggcatgctc
gactggctcaagcaagtgggcttcaccgtcaacccgctgatcaccttgtgccacagcgtc
gacgacgcgctggcgttctatcgccggatcggcgagcagcgcgcggggctcggctacgac
atcgacggcgtggtctacaaggtcgaccgcatcgactggcaggcgcggctcggcttcgtc
tcgcgcagcccgcgctgggcgatcgcgcataaattcgccgccgaacaggcgatgacggtg
ctggaaaagatcgacatccaggtcggccgcaccggcgcgctgacgccggtggcgcggcta
gcgccagtcacggtcggcggcgtggtggtgcagaacgccacgctgcacaatgaggactac
atcaagggcgtcggcaatgacggcgtggcgatccgcgacggcgtcgatatccgcgaaggc
gataccgtggtgatccagcgcgccggcgacgtgatcccgcagatcgtcagcgttgtgctc
gacaagcggcctaaagacgcgaagccttacgcgtttccgcagcgatgcccggtgtgcggc
agccacgcggtgcgcgaggacggcgaggtggtgcggcgctgcaccggcgcgctgatctgt
ccggcgcaggcggtggagcggctcaagcatttcgtgtcgcggctggccttcgacatcgac
gggctcggcgacaagcagatccaggaattctacgacgacgggctgatcatgcatccggtc
gacatcttcacgctgcagaaacgcgacgcccgcgcgagcaagcagctgcgcgatcgcgag
ggcttcggcgagacctcggtgcgcaatctgttcgccgcgatcgatgcgcgccgccgcatc
gaactgcaccggctgatcttcgcgctcgggattcgccatgtcggcgagggcaacgccaag
ctgctggcgcggcattacggcacattcgatgccttccgcgacgcgatgctggcggcggcc
tccggccaaagcgaagagggcaattcgtccgaggcctataccgacctgaacaatatcggc
ggcgttggcgagatcgtcgccgacgcggtggtcgagttcttcgccgagcaacgcaacgtc
aaggcgctcggcgaattgctcgacgagatcgaggtgctgccggccgagcaggtcaagcgc
gataccgcgatcgccggcaagaccgtggtgttcaccggctcgctgaccaaattcacccgc
gacgaggccaaggccgcggccgagcggttaggggccaaggtggcgggctcggtgtcgaag
aagaccgactacgtggtcgccggcgaggatgccggctcgaagttgaccaaggcgaaagac
ctcggcgtcgcggtgctgaccgaggatgagtggctcaagctgatcgagggttag
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