Rhodococcus sp. DN22: RA302_11550
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Entry
RA302_11550 CDS
T09949
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhoo
Rhodococcus sp. DN22
Pathway
rhoo03030
DNA replication
rhoo03410
Base excision repair
rhoo03420
Nucleotide excision repair
rhoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA302_11550 (ligA)
03410 Base excision repair
RA302_11550 (ligA)
03420 Nucleotide excision repair
RA302_11550 (ligA)
03430 Mismatch repair
RA302_11550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhoo03032
]
RA302_11550 (ligA)
03400 DNA repair and recombination proteins [BR:
rhoo03400
]
RA302_11550 (ligA)
Enzymes [BR:
rhoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RA302_11550 (ligA)
DNA replication proteins [BR:
rhoo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RA302_11550 (ligA)
DNA repair and recombination proteins [BR:
rhoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RA302_11550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RA302_11550 (ligA)
MMR (mismatch excision repair)
DNA ligase
RA302_11550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RA302_11550 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
WVX72813
LinkDB
All DBs
Position
2516973..2519075
Genome browser
AA seq
700 aa
AA seq
DB search
MTETADAMQPAPNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQY
PDLRTPDSPTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRGWIAKVEQETGPELHYL
CEVKIDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPTLL
EVRGEVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFG
RMEGFEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVV
KVDEMSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREFVMPTHCP
ECGTLLAPAKEGDVDVRCPNQQYCPAQLRERVFHVSGRGAFDIEVLGYEAATGLLEAKVI
GDEGDLFSLDAEKLIEVPIFRTNAGALSANGKRLLANLDSAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWFSVDWHQQIVDKWASAGVR
MEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKEAILVRGGKAAGSVSKKTAFVVVGEAP
GSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAPTDLDESE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaaccgcggatgcaatgcagccagcgcccaacgaggcgcgcgagcagtggacg
gagctggccgaagaggtacgccagcatcagttccgctactacgttcgtgacgcgcccgtc
atttcggacggtgcattcgacacattgctcgggcagctcaatgctctcgaagagcagtac
ccggatctgcgaactcccgactctccgacgcaactcgtcggcggcggattcgcgacggac
ttcacgtccgtcgatcacctcgagcggatgctcagcctcgacaacgtcttcgacgagtcc
gaactccgcggatggatcgccaaggtagagcaggaaaccgggccggaactgcactatctg
tgcgaagtgaaaatcgacggtgtcgcgctcaatctcgtctacgagaacggcaaactcgtg
cgtgccgcaacccgcggcgacggtcgtacgggcgagttggtcactctcaatgccctgacg
atcaacgacatcccggagcggctcaccgctacggacgaatacccgattccaaccttgctc
gaggtgcgaggagaggtgttcttccgcctcgaggacttcgcggcactcaatgcctccctc
gtggaggagggtaaggcgccgttcgccaatccgcgcaactctgcggcgggctccctgcgt
cagaagaatcctgccgtcaccgcgcgtcgtcgcctcggcatgatctgccacgggttcggg
cgcatggaaggtttcgagccggcttcccagtacgacgcctacgtggccctcgccgcctgg
gggctgccggtgtccacgcacacctcgcgggtggtcggcgccgacgccgtggtcgagaag
atgaagtactggggagaacatcgccacgacgtcgagcacgagatcgacgggttggtggtc
aaggtcgacgagatgtcgttgcatcgacgtctgggcaccacgtctcgcgcaccgaggtgg
gcgatcgcgtacaagtacccgccggaagaggtcacgaccaagctcctcgacatccgggtc
agtgtcggccgtacgggtcgcgtgacgccgtttgcgtacatggaacccgtcacggtggcg
ggttccactgtgtccttggccacgctgcacaacggatccgaggtcaaacgcaagggtgtg
ctgatcggcgacaccgtggtgttgcgtaaggccggagatgtgattcccgaggtcctcgga
cccgtggcagacgtgcgcgacggtacggagcgcgagttcgtgatgccgacgcattgcccc
gagtgcggcacgttgttggcacccgcgaaagagggcgacgtcgacgtgcgatgccctaat
cagcagtactgcccggcgcagttgcgcgagcgtgtgttccacgtctcggggcgcggagca
ttcgacatcgaggtgctcggttacgaggccgcgaccggactgctggaggcgaaggtcatc
ggtgacgagggcgatctcttctcgctcgacgccgagaaactgatcgaggttccgatcttc
cgcaccaatgcgggagcgctgtctgccaacggaaaacgcttgctggccaacctggattcg
gccaaggacaagccgctgtggagagtgcttgtggcactgtcgattcggcacgtcggcccc
actgccgcgagggcgttggctggcgaattcggttcgctgcaacgtattcgggaagcgtcg
gtcgacgagttggctgcagtcgacggtgtcggatccacaatcgccgccgctgtcgtggag
tggttctccgtcgactggcaccagcagatcgtcgacaagtgggcttcggccggagtgcgt
atggaggacgagcgagacgactcgattccgcgcaatctcgagggtctctcgatcgtcgtc
accggttcgctcgagacgtactcgcgagatcaggcgaaggaagcgattttggtgcgcggc
ggtaaggcggctgggtcggtctcgaagaagactgcgtttgtcgtcgtcggtgaagcgccc
ggttccaagcatgacaaggcagtcgaattgggtgtgccggtgctcgacgaagacggcttc
cggcggttgctcgaagatggcccggatgcggttgctcccaccgatttggacgaatcagag
tga
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