Rhodococcus sp. P1Y: D8W71_14630
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Entry
D8W71_14630 CDS
T09477
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhop
Rhodococcus sp. P1Y
Pathway
rhop03030
DNA replication
rhop03410
Base excision repair
rhop03420
Nucleotide excision repair
rhop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D8W71_14630 (ligA)
03410 Base excision repair
D8W71_14630 (ligA)
03420 Nucleotide excision repair
D8W71_14630 (ligA)
03430 Mismatch repair
D8W71_14630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhop03032
]
D8W71_14630 (ligA)
03400 DNA repair and recombination proteins [BR:
rhop03400
]
D8W71_14630 (ligA)
Enzymes [BR:
rhop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D8W71_14630 (ligA)
DNA replication proteins [BR:
rhop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D8W71_14630 (ligA)
DNA repair and recombination proteins [BR:
rhop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D8W71_14630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D8W71_14630 (ligA)
MMR (mismatch excision repair)
DNA ligase
D8W71_14630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D8W71_14630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AYJ49354
LinkDB
All DBs
Position
3165741..3167921
Genome browser
AA seq
726 aa
AA seq
DB search
MDESTAPPSADTSQLDAQGAPASSEDRDRWQKLAEEVRGHQFRYYVRDSPVVSDGEFDTL
LRELNGLEDAHPELRTADSPTQLVGGGFATEFTAVDHLDRMLSLDNVFDYDELRAWAKRV
EAEVDGRSAGSDPGTGPNLHYLCEVKIDGVALNLVYENGKLVRGATRGDGRTGEDVTLNA
RTISDIPETLTESADYPTPTLLEVRGEVFFRLADFQALNAALVEEGKAPFANPRNSAAGS
LRQKNPAVTSKRRLGMICHGFGRMEGFSPDSQMHAYEALKAWGLPVSTHTTRVEGIDAVV
EKVAYWDDHRHDVEHEIDGLVVKVDEMSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDI
RVSVGRTGRVTPFAYMVPVLVAGSTVSLATLHNGSEVKRKGVLIGDTVTIRKAGEVIPEV
LGPVVDARDGSEREFVMPTNCPECDTVLAPAKEGDADLRCPNSQFCPAQRRERVFFVAER
GRFDIEGLGYEAATGLLEADAIEDEGDIFSLTEEDLLKTTIFRTKAGSLSANGKRLLANL
DKAKDRPLWRVLVSLSIRHVGPSAGRALATEFGSLERIEQATQEELAAVDGVGGTIATAV
AEWFGVDWHRTIVEKWRAAGVRMEDERDESIVRNLEGLSIVVTGSLENYSRDQAKEAILA
RGGKAAASVSKKTAFVVVGESPGTKHDKAVELGVQVLDEEGFTLLLTEGPDAVRPAEPEA
DPPEAD
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtggacgaatcgactgcaccgccttccgccgacacctcccagctcgatgcgcaaggggct
cccgcgtcgagcgaggaccgggatcggtggcagaagctggccgaggaagttcgcgggcac
cagttcaggtactacgtgcgtgactcaccggtcgtatccgacggcgagttcgacacattg
ctgcgcgagttgaacggcctggaggacgcgcaccccgagcttcggacagccgactcaccc
acgcagctcgtcggcgggggattcgcgaccgaattcacagccgtcgaccatctcgaccga
atgttgagtctggacaacgtattcgactacgacgaactccgcgcctgggccaagcgcgta
gaggccgaggtggatggtcgctccgcaggctccgatcccgggacgggtccgaacctgcac
tacctgtgcgaggtcaagatcgacggcgtcgcactcaatctcgtgtacgagaacggcaaa
ctcgtgcgcggcgcgacacgcggcgacggtaggaccggcgaggacgtcaccctcaatgcc
cgcacgatctccgacatcccggagacgctcaccgaaagcgccgactacccgacgccgacg
cttctcgaagttcggggcgaggtgttctttcggctggcggactttcaagcactcaacgcc
gccctcgtggaggaaggcaaggcgccgttcgcgaatccacgtaattctgctgcgggttcc
cttcgccagaagaatccggccgtcacctccaagcggcggctggggatgatttgtcacgga
ttcggtcggatggagggattctcgcccgattcccagatgcacgcgtacgaagcgttgaag
gcctggggtctgccggtatcgacccacaccacgcgcgtggaaggcatcgacgcggtagtc
gagaaagtggcgtactgggacgaccaccgccatgacgtcgaacacgagatcgacggcctc
gtggtcaaggtcgacgaaatgtcgttgcatcgcaggctgggaactacctcacgcgccccg
cggtgggcgatcgcatacaagtatccacccgaagaagtcaccaccaagctcctcgacatc
cgggtcagcgtgggcaggaccggccgggtgacgccgttcgcgtacatggtgccggtcctc
gtcgccggatcgacggtgtccctggcgacgcttcacaacggttccgaggtcaagcgtaaa
ggcgtgctgatcggagacacggtcaccatacgcaaggccggtgaagtgattcccgaagtt
ctgggtccagtggtggacgcgcgggacggcagcgaacgggaattcgtcatgccgaccaac
tgcccggaatgcgataccgtgctcgcgcccgcgaaggaaggcgacgccgacctgcgctgc
cccaactcgcagttctgcccggctcagcgccgtgagcgggtgttcttcgtcgccgagcgc
ggtcgattcgatatcgagggactcggatacgaggctgccaccggactcctcgaggccgac
gcgatcgaggacgagggcgacatattctccctcaccgaagaagatctgctgaaaaccact
atctttcgcaccaaggcgggttcgctgtccgcgaacggtaagcgcttgctggccaacctc
gacaaggccaaggaccgaccgctatggcgcgtcctcgtgagtctgtcgatcaggcatgtc
gggccatccgccggtcgcgcgctcgcaacggagttcggcagtctggagcgaatcgagcag
gcgacacaagaagaactagcggcggtcgacggggtcggcggcaccatcgccactgcagtc
gccgaatggttcggtgtggactggcatcgaacgatcgtcgagaaatggcgtgcagcgggc
gtgcgcatggaggacgagcgcgacgaatcgatcgtgcgaaacctcgaaggattgtccatc
gttgtcaccggatcgctcgaaaactactcgcgcgatcaggcgaaggaagcgatcctcgcc
cgcggtggtaaagcggcggcgtcggtgtcgaagaagacggcattcgtcgtggtcggagag
tctccagggaccaagcacgacaaagcagtcgaactcggagtgcaggtcttggacgaggag
ggcttcacccttctgctgacagagggaccggatgcggtgcgcccggccgagccggaggcg
gatccgccggaggcggactga
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