Rhodococcus sp. 11-3: KZJ41_17540
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Entry
KZJ41_17540 CDS
T10209
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhou Rhodococcus sp. 11-3
Pathway
rhou03030
DNA replication
rhou03410
Base excision repair
rhou03420
Nucleotide excision repair
rhou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KZJ41_17540 (ligA)
03410 Base excision repair
KZJ41_17540 (ligA)
03420 Nucleotide excision repair
KZJ41_17540 (ligA)
03430 Mismatch repair
KZJ41_17540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhou03032
]
KZJ41_17540 (ligA)
03400 DNA repair and recombination proteins [BR:
rhou03400
]
KZJ41_17540 (ligA)
Enzymes [BR:
rhou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KZJ41_17540 (ligA)
DNA replication proteins [BR:
rhou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KZJ41_17540 (ligA)
DNA repair and recombination proteins [BR:
rhou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KZJ41_17540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KZJ41_17540 (ligA)
MMR (mismatch excision repair)
DNA ligase
KZJ41_17540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KZJ41_17540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
USC13497
LinkDB
All DBs
Position
complement(3775321..3777444)
Genome browser
AA seq
707 aa
AA seq
DB search
MSESTDAPTQAPPDVRERWQQLAEEVREHQFRYYVRDAPIISDGAFDQLLGALKQLEDDY
PDLRVPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFTEDELRAWVSRVEAETGPDLHYL
CEVKIDGVALSLVYEDGRLRRAATRGDGRTGEEVTLNALTIDDIPERLTATEEFPVPRVL
EVRGEVYFRLEDFHALNAALVAEGKAPFANPRNTAAGSLRQKNPAVTARRRLGMICHGLG
RVEGFEPVSLSQSYAALAAWGLPVSGHTARVVGVEEVVARMRYWGEHRHDVEHEIDGLVV
KVDEVSLQRRLGTTSRAPRWAIAYKYPPEEVTTTLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNAAEVARKGVLIGDTVVLRKAGDVIPEVLGPVVDLRDGTEREFVMPTECP
ECGTPLAPAKEGDVDLRCPNQRHCPAQLRERVFHVAGRGAFDIEALGYEAATALLEAGVI
ADEGDLFDLTAEDLLRTSLFRTKAGALSANGKRLLANLQAAKDKPLWRVLVALSIRHVGP
TAARALATEFGSLDRIREASVDELAAVEGVGPTIAAALGEWFAVDWHVAIVEKWRAAGVR
MLDERDESIERTLEGLSIVVTGSLEGFSRDQAKEAILLRGGKAAGSVSKKTAFVVVGDAP
GTKADKAAELGIPVLDEDGFRRLLELGPDGVSGGQDAIEEEFGELES
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaatcgacggacgcgcccacccaagctccgcccgacgtgcgcgagcgctggcag
cagctcgcggaggaggtgcgcgagcaccagttccgctactacgtgcgcgacgcgccgatc
atctccgacggcgccttcgaccagttgctcggcgcgctgaagcagctcgaggacgactac
ccggacctgcgcgtcccggactccccgacgcagctcgtcggtgggggcttcgccaccgac
ttcaccgccgtcgaccacctcgagcggatgctcagcctcgacaacgtcttcaccgaggac
gaactgcgcgcctgggtttcccgcgtcgaggccgagacgggtccggacctgcactacctg
tgcgaggtgaagatcgacggcgtcgcgctgagtctggtgtacgaggacggccgcttgcgc
cgtgccgccacccgcggcgacggccgcaccggcgaggaggtcacgctcaatgccctcacg
atcgacgacatccccgaaaggctcaccgccaccgaggaatttcccgtcccccgggttctc
gaggtgcggggcgaggtgtacttccggctcgaggacttccacgcgctcaacgccgccctc
gtcgccgagggcaaggccccgttcgccaatccgcgcaacaccgcggccggatcgctgcgg
cagaagaaccccgcggtgaccgcgcggcgccgcctcgggatgatctgccacgggctcggc
cgcgtcgaaggattcgagccggtgtcgctgtcgcagtcctacgccgccctcgccgcctgg
gggttgcccgtctccgggcacaccgcccgcgtcgtcggcgtcgaggaggtcgtcgcccgg
atgcggtactggggcgagcaccgccacgacgtcgaacacgagatcgacgggctcgtcgtc
aaggtcgacgaggtgtccctgcagcgccggctcggcaccacctcgcgcgcaccccggtgg
gcgatcgcctacaagtacccgccggaggaggtgaccaccacgttgctcgacatccgcgtc
agcgtcggccgcacgggccgggtcaccccgttcgcctacatggaaccggtcacggtggcc
gggtcgacggtctccctcgccaccctgcacaacgcggcggaggtggcccgcaagggcgtg
ctcatcggcgacacggtggtgctgcgcaaggccggtgacgtcatccccgaggtgctcggc
ccggtggtggacctgcgcgacggcaccgaacgcgagttcgtcatgcccaccgaatgcccc
gagtgcgggacaccgctcgcccccgccaaggagggtgacgtggacctgcgctgtcccaac
cagcggcactgccccgcacagttgcgtgagcgggtcttccacgtcgcgggccgcggcgca
ttcgacatcgaggcgctcggctacgaggccgccaccgcgctgctcgaggccggggtgatc
gccgacgagggtgacctgttcgacctgaccgccgaggacctgctgcggacgtcgctcttc
cgcaccaaggcgggggcgctgtccgccaacggcaagcgcctgctggcgaatctccaagca
gccaaggacaagccgctgtggcgggtgctggtggcactgtcgatccggcacgtcggcccc
accgccgcacgggcgctggccaccgaattcggcagcctcgaccggatccgcgaggcgtcc
gtggacgagctcgccgccgtcgagggggtgggaccgaccatcgctgcggccctgggtgaa
tggttcgccgtcgactggcacgtcgcgatcgtcgagaagtggcgcgcggcgggggtgcgc
atgctcgacgagcgcgacgaatccatcgaacgcaccctcgagggcctgtcgatcgtggtc
accggatcgctcgagggtttctcgcgggatcaggccaaggaggcgatcctgctccgcggc
ggcaaggcggccggttcggtgtcgaagaagaccgcgttcgtcgtcgtcggcgatgccccg
ggaacgaaggccgacaaggcggccgagctgggcatccccgtcctcgacgaggacgggttc
cgccggctgctcgaactcggcccggacggcgtctcgggtggccaggacgcgatcgaggag
gagttcggcgagctcgagagctga
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