KEGG   Rhodococcus sp. WB1: A4U64_08275
Entry
A4U64_08275       CDS       T10270                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rhow  Rhodococcus sp. WB1
Pathway
rhow03030  DNA replication
rhow03410  Base excision repair
rhow03420  Nucleotide excision repair
rhow03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rhow00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A4U64_08275
   03410 Base excision repair
    A4U64_08275
   03420 Nucleotide excision repair
    A4U64_08275
   03430 Mismatch repair
    A4U64_08275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhow03032]
    A4U64_08275
   03400 DNA repair and recombination proteins [BR:rhow03400]
    A4U64_08275
Enzymes [BR:rhow01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A4U64_08275
DNA replication proteins [BR:rhow03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A4U64_08275
DNA repair and recombination proteins [BR:rhow03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A4U64_08275
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A4U64_08275
   MMR (mismatch excision repair)
    DNA ligase
     A4U64_08275
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A4U64_08275
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH Nlig-Ia PTCB-BRCT UPF0758_N Auto_anti-p27
Other DBs
NCBI-ProteinID: ANZ24696
LinkDB
Position
1853022..1855145
AA seq 707 aa
MSESTDAPTQAPPDVRERWQQLAEEVREHQFRYYVRDAPIISDGAFDQLLGALKQLEDDY
PDLRVPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFTEDELRAWVSRVEAETGPDLHYL
CEVKIDGVALSLVYEDGRLRRAATRGDGRTGEEVTLNALTIDDIPERLTATEEFPVPRVL
EVRGEVYFRLEDFHALNAALVAEGKAPFANPRNTAAGSLRQKNPAVTARRRLGMICHGLG
RVEGFEPVSLSQSYAALAAWGLPVSGHTARVVGVEEVVARMRYWGEHRHDVEHEIDGLVV
KVDEVSLQRRLGTTSRAPRWAIAYKYPPEEVTTTLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNAAEVARKGVLIGDTVVLRKAGDVIPEVLGPVVDLRDGTEREFVMPTECP
ECGTPLAPAKEGDVDLRCPNQRHCPAQLRERVFHVAGRGAFDIEALGYEAATALLEAGVI
ADEGDLFDLTAEDLLRTSLFRTKAGALSANGKRLLANLQAAKDKPLWRVLVALSIRHVGP
TAARALATEFGSLDRIREASVDELAAVEGVGPTIAAALGEWFAVDWHVAIVEKWRAAGVR
MLDERDESIERTLEGLSIVVTGSLEGFSRDQAKEAILLRGGKAAGSVSKKTAFVVVGDAP
GTKADKAAELGIPVLDEDGFRRLLELGPDGVSGGQDAIEEEFGELES
NT seq 2124 nt   +upstreamnt  +downstreamnt
gtgagtgaatcgacggacgcgcccacccaagctccgcccgacgtgcgcgagcgctggcag
cagctcgcggaggaggtgcgcgagcaccagttccgctactacgtgcgcgacgcgccgatc
atctccgacggcgccttcgaccagttgctcggcgcgctgaagcagctcgaggacgactac
ccggacctgcgcgtcccggactccccgacgcagctcgtcggtgggggcttcgccaccgac
ttcaccgccgtcgaccacctcgagcggatgctcagcctcgacaacgtcttcaccgaggac
gaactgcgcgcctgggtttcccgcgtcgaggccgagacgggtccggacctgcactacctg
tgcgaggtgaagatcgacggcgtcgcgctgagtctggtgtacgaggacggccgcttgcgc
cgtgccgccacccgcggcgacggccgcaccggcgaggaggtcacgctcaatgccctcacg
atcgacgacatccccgaaaggctcaccgccaccgaggaatttcccgtcccccgggttctc
gaggtgcggggcgaggtgtacttccggctcgaggacttccacgcgctcaacgccgccctc
gtcgccgagggcaaggccccgttcgccaatccgcgcaacaccgcggccggatcgctgcgg
cagaagaaccccgcggtgaccgcgcggcgccgcctcgggatgatctgccacgggctcggc
cgcgtcgaaggattcgagccggtgtcgctgtcgcagtcctacgccgccctcgccgcctgg
gggttgcccgtctccgggcacaccgcccgcgtcgtcggcgtcgaggaggtcgtcgcccgg
atgcggtactggggcgagcaccgccacgacgtcgaacacgagatcgacgggctcgtcgtc
aaggtcgacgaggtgtccctgcagcgccggctcggcaccacctcgcgcgcaccccggtgg
gcgatcgcctacaagtacccgccggaggaggtgaccaccacgttgctcgacatccgcgtc
agcgtcggccgcacgggccgggtcaccccgttcgcctacatggaaccggtcacggtggcc
gggtcgacggtctccctcgccaccctgcacaacgcggcggaggtggcccgcaagggcgtg
ctcatcggcgacacggtggtgctgcgcaaggccggtgacgtcatccccgaggtgctcggc
ccggtggtggacctgcgcgacggcaccgaacgcgagttcgtcatgcccaccgaatgcccc
gagtgcgggacaccgctcgcccccgccaaggagggtgacgtggacctgcgctgccccaac
cagcggcactgccccgcacagttgcgtgagcgggtcttccacgtcgcgggccgcggcgca
ttcgacatcgaggcgctcggctacgaggccgccaccgcgctgctcgaggccggggtgatc
gccgacgagggtgacctgttcgacctgaccgccgaggacctgctgcggacgtcgctcttc
cgcaccaaggcgggggcgctgtccgccaacggcaagcgcctgctggcgaatctccaagca
gccaaggacaagccgctgtggcgggtgctggtggcactgtcgatccggcacgtcggcccc
accgccgcacgggcgctggccaccgaattcggcagcctcgaccggatccgcgaggcgtcc
gtggacgagctcgccgccgtcgagggggtgggaccgaccatcgctgcggccctgggtgaa
tggttcgccgtcgactggcacgtcgcgatcgtcgagaagtggcgcgcggcgggggtgcgc
atgctcgacgagcgcgacgaatccatcgaacgcaccctcgagggcctgtcgatcgtggtc
accggatcgctcgagggtttctcgcgggatcaggccaaggaggcgatcctgctccgcggc
ggcaaggcggccggttcggtgtcgaagaagaccgcgttcgtcgtcgtcggcgatgccccg
ggaacgaaggccgacaaggcggccgagctgggcatccccgtcctcgacgaggacgggttc
cgccggctgctcgaactcggcccggacggcgtctcgggtggccaggacgcgatcgaggag
gagttcggcgagctcgagagctga

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