Rhodococcus sp. D-6: RBB84_10750
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Entry
RBB84_10750 CDS
T10622
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhox Rhodococcus sp. D-6
Pathway
rhox03030
DNA replication
rhox03410
Base excision repair
rhox03420
Nucleotide excision repair
rhox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB84_10750 (ligA)
03410 Base excision repair
RBB84_10750 (ligA)
03420 Nucleotide excision repair
RBB84_10750 (ligA)
03430 Mismatch repair
RBB84_10750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhox03032
]
RBB84_10750 (ligA)
03400 DNA repair and recombination proteins [BR:
rhox03400
]
RBB84_10750 (ligA)
Enzymes [BR:
rhox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBB84_10750 (ligA)
DNA replication proteins [BR:
rhox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBB84_10750 (ligA)
DNA repair and recombination proteins [BR:
rhox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBB84_10750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBB84_10750 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBB84_10750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBB84_10750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
DUF4796_N
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
XBW06342
UniProt:
A0AAU7V3V7
LinkDB
All DBs
Position
complement(2284982..2287090)
Genome browser
AA seq
702 aa
AA seq
DB search
MSEPTDAPITAPPEARERWQDLAEQVREHQFRYYVRDAPIISDGQFDALLGELQALEDQY
TELRTPDSPTQLVGGGFATEFGAVEHLERMLSLDNVFDEDELRAWLSRAEVETGTHPDYL
CEVKIDGVALSLVYENGKLVRAATRGDGRTGEDVTLNARTIDDVPEKLTGTAEYPIPTLL
EVRGEVFFRLEDFQTLNAGLVAEDKPPFANPRNSAAGSLRQKNPAVTARRRLRMYCHGYG
RMEGFEPRSQSDAYAAFAAWGLPVSPHTVRVQGAEAVVERMRYWGEHRHDIEHEIDGLVV
KIDDMGLHRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNASEVERKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEYAFEMPTQCP
ECGTTLAPAKEGDVDLRCPNSRSCPAQLRERVFHVSGRGAFDIEALGYEAATALLEGKII
ADEGDLFSLTKEDLERIAFFRTTKGVLSKNGERLLQNLDKAKEQPLWRVLVALSIRHVGP
TAARALATEFGSLDRIRAASVDELAAVEGVGPTIAAAVTDWFTVDWHVAIVDKWAAAGVR
MADERDESIPRTLEGLSIVVTGTLAGFSRDQAKEAVLARGGKAAGSVSKKTAFVVIGDNP
GSKADKAADLGVPVLDEDGFRILLDEGPDAARAYLEGREGED
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaccgacggacgcacccatcaccgctcctccggaggcgcgtgagcgctggcag
gatctcgccgaacaggtgcgcgagcatcagttccgttattacgtgcgcgacgcccccatc
atctccgacggtcagttcgacgcgctcctcggcgaactgcaggcactcgaggatcagtac
accgaactccgcacgccggattcgcccacccagctggtcggcggcggcttcgccaccgaa
ttcggtgccgtcgagcatctcgaacggatgctcagcctcgacaacgtcttcgacgaggac
gaactgcgcgcgtggctctcgcgcgccgaggtcgagaccggcactcaccccgattatctg
tgcgaggtgaagatcgacggcgtggcgctcagcctcgtctacgagaacggcaaactcgtc
cgcgcggccacccgcggcgacggacgcaccggggaggacgtcaccctcaacgcccgcacg
atcgacgacgttcccgaaaagctcaccggcaccgccgaatacccgatcccgacgttgctc
gaagtgcgcggcgaggtgttcttccggctcgaggacttccagaccctcaacgccgggctg
gtggccgaagacaagccgcccttcgcgaatccccgcaattccgccgccggttccctgcgg
cagaagaacccggccgtcaccgcgcgccggcgtctgcgcatgtactgccacggctacggc
cgcatggagggcttcgaaccccgctcgcaatccgacgcctacgcggccttcgcggcctgg
ggcctgcccgtctcaccgcacactgttcgcgtgcagggcgccgaggcggtcgtcgagcgg
atgcgctactggggcgaacaccgccacgacatcgaacatgagatcgacggcctggtggtc
aagatcgacgacatggggctgcaccgacgcctcggtgccacgtcccgcgccccacggtgg
gcgatcgcctacaagtacccgccggaggaggtcaccaccaagctcctcgacatccgcgtc
agtgtcgggcgcaccggacgcgtgacccccttcgcctacatggagccggtcaccgtcgcc
gggtccaccgtctcgctggcgacgctgcacaacgcgtccgaggtggagcgcaaaggcgtg
ctcatcggcgacaccgtggtcatccgcaaggccggcgacgtgatcccggaggtcctcggc
ccggtcgtcgacctgcgcgacggttccgagtacgccttcgagatgcccacgcagtgcccc
gaatgcggtaccaccctcgccccggcgaaggagggcgacgtcgacctgcgctgccccaac
tcgcggtcgtgcccggcgcaattgcgcgagcgggtcttccacgtctcgggcaggggagcg
ttcgacatcgaagccctcggctacgaggcggccacggcgctgctcgaggggaagatcatc
gccgacgagggcgacctgttctcgctcacgaaggaagacctcgaacgcatcgcgtttttc
cgcaccaccaagggcgtgctgtcgaagaacggcgaacgtctgctgcagaacctcgacaag
gcgaaggaacagccgctctggcgcgtgctggtcgccctgtccatccggcacgtcggaccg
accgctgcgcgtgcgctggccaccgagttcggcagcctcgaccggatccgggccgcgtcc
gtcgacgagctcgcggccgtcgagggcgtcggaccgacgatcgccgcggcggtgaccgac
tggttcaccgtcgattggcacgtcgcgatcgtcgacaagtgggcggcagcgggtgtccgg
atggccgacgaacgcgacgaatcgatcccgcgaaccctcgaaggactgtcgatcgtggtt
acgggcacgctcgcgggattctcccgcgaccaggccaaggaggccgtcctcgcgcgcgga
ggcaaggccgccggatcggtgtcgaagaagacggctttcgtcgtcatcggcgacaacccg
ggttcgaaggccgacaaggccgccgatctcggagtacccgtgctcgacgaggacggtttc
cggatcctgctcgacgaggggcccgacgccgctcgcgcctatctcgaagggcgcgaaggg
gaggactga
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