Rhodobacter xanthinilyticus: LPB142_10065
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Entry
LPB142_10065 CDS
T04631
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhp
Rhodobacter xanthinilyticus
Pathway
rhp03030
DNA replication
rhp03410
Base excision repair
rhp03420
Nucleotide excision repair
rhp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB142_10065
03410 Base excision repair
LPB142_10065
03420 Nucleotide excision repair
LPB142_10065
03430 Mismatch repair
LPB142_10065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhp03032
]
LPB142_10065
03400 DNA repair and recombination proteins [BR:
rhp03400
]
LPB142_10065
Enzymes [BR:
rhp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPB142_10065
DNA replication proteins [BR:
rhp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB142_10065
DNA repair and recombination proteins [BR:
rhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPB142_10065
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB142_10065
MMR (mismatch excision repair)
DNA ligase
LPB142_10065
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB142_10065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AOZ69618
UniProt:
A0A1D9MCU6
LinkDB
All DBs
Position
complement(2050410..2052539)
Genome browser
AA seq
709 aa
AA seq
DB search
MTAEDKIDVAQLSRDAAVAEVAELTARLVAANTAYHTLDRPEISDAEYDALKRRLAEIET
RFPDLQSPDSPTLKVGAAVADGFAKVTHAQRMMSLENGFSEEDIADFVARVRSYLGLAED
HPVSFTAEPKIDGLSLSLRYENGRLVQAATRGDGAVGENVTENARTIADIPGELPCAPEV
LEVRGEVYMAKEDFEALNSRQLARSEKPFANPRNAAAGSLRQLDAKITAARPLRFFAYAW
GELSAPLAETQFDAIARLARLGFQTNPLTVLCQTPAELLAHYRRIEQQRATLGYDIDGVV
YKVNDLALQRRLGFRATTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLAPVTV
GGVVVSNATLHNEDYIAGRDSRGAEIRGGKDIREGDWVQVYRAGDVIPKVADVDLSRRNI
HAQPFEFPHLCPECGSEAIREEGDSVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLGAK
QVEAFYKDGWIRTPAEIFTLRARFGPGNLRQLANRDGWGEKSALKLFDAIDERRRIPLAR
FLFALGIRHIGESTAALLANHYTSWARLAEAVAAADSFTGPAWEELLAIDGVGETTARSL
IATLNHSADKAAIAALLEEVTPEDAEIRDTSGSPIAGKTLVFTGTLERMTRAEAKARAEA
MGAKVAGSVSAKTDLLIAGPGAGSKAKKAAELGIEVIDEDAWIALAGGV
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagaagacaagatcgacgtcgctcagttgagccgggatgccgctgtggcggag
gttgcggagttgaccgcacggctcgtggccgccaataccgcctatcataccctcgatcgc
cccgagatctccgacgccgaatatgacgccctcaagcgccgcctcgccgagatcgaaacc
cgcttccccgatctgcaaagccccgacagcccgaccctcaaggtcggcgctgcggtggcg
gatgggtttgccaaggtcacccatgcgcagcggatgatgagcctcgaaaacggcttttcc
gaagaggatatcgccgatttcgtggcccgggtgcgcagctatctcggccttgccgaggat
cacccggtcagcttcaccgcggagccgaaaatcgacgggctctcgctgtcgctgcgctac
gaaaacggccgtctcgttcaagcggccacccggggcgacggcgcggtgggcgaaaatgtc
accgaaaatgcccgcacgatcgcggatatcccgggcgagctgccatgcgcgccggaggtt
ttggaggtgcgcggcgaggtttacatggccaaagaggatttcgaggcgctcaactcccgc
cagcttgctcgcagcgagaagccctttgccaatccgcgcaacgccgccgcggggtcgctg
cgccagctcgatgcgaaaatcaccgccgcgcgcccgctgcgttttttcgcctatgcctgg
ggcgagctctccgccccactggccgagacccagtttgacgcgatcgcccgcctcgcgcgt
ctcggcttccagaccaacccgctcaccgtcctgtgccagaccccggccgagctcctcgcc
cattaccgccggatcgagcagcagcgcgcgacgcttggctatgacatcgacggcgtcgtc
tacaaggtcaacgacctcgccctgcaacgccgcctgggcttccgcgccaccacgccgcgc
tgggcgatcgcgcataaattccccgccgagctcgcctggacgcggctcgagaaaatcgag
atccaggtcggccgcaccggcgcgctcagccccgtcgcgcggctcgcgccggtcaccgtc
ggcggcgtcgtcgtctcgaatgcgacgctccacaacgaggattacatcgccgggcgcgat
tcccgcggcgctgaaatccgcggcggcaaggatatccgcgagggcgattgggtgcaggtc
tatcgcgcgggcgatgtcatccccaaggtcgccgatgtcgacctctcgcgccgcaacatc
cacgcgcaaccctttgaattccctcatctctgcccggaatgcggctccgaggcgatccgt
gaggagggcgattccgtgcgccgctgcacgggcgggctgatctgcccggcgcaggccgtc
gagaagctcaaacatttcgtctcgcgcgcggccttcgatatcgaggggctcggcgcgaaa
caggtcgaggccttctacaaggacggctggatccgcaccccggccgagattttcaccctg
cgcgcgcgctttggcccgggcaacctgcgccagctcgccaatcgcgacggctggggcgag
aaatccgcgctcaagctcttcgacgcgatcgacgagcgccgccgcatcccgctcgcgcgc
ttcctcttcgcgctcggcatccgccatatcggcgagagcacggcggcgcttttggccaat
cattacacctcctgggcgcggctcgccgaggcggtcgcggccgccgacagcttcaccggc
cccgcctgggaggagctgctcgcgatcgatggcgtcggcgaaaccaccgcgcgctcgctg
atcgcgacgctcaaccactccgccgacaaggccgcgatcgcggcgctgctcgaggaggtc
acccccgaggacgccgagatccgcgacacctcgggcagcccgatcgcgggtaagacgctg
gttttcaccggcacgctcgagcggatgacccgcgccgaggcgaaggcgcgcgccgaggcg
atgggcgccaaggtcgcgggctcggtctcggccaagaccgatctcctgatcgcgggcccg
ggcgcggggtcaaaggcgaaaaaggccgccgagctcggcatcgaggtgatcgacgaagac
gcctggatcgcgctggcgggcggcgtatga
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