Rhodococcus sp. RCBS9: P0M12_23910
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Entry
P0M12_23910 CDS
T11459
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhrc Rhodococcus sp. RCBS9
Pathway
rhrc03030
DNA replication
rhrc03410
Base excision repair
rhrc03420
Nucleotide excision repair
rhrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P0M12_23910 (ligA)
03410 Base excision repair
P0M12_23910 (ligA)
03420 Nucleotide excision repair
P0M12_23910 (ligA)
03430 Mismatch repair
P0M12_23910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhrc03032
]
P0M12_23910 (ligA)
03400 DNA repair and recombination proteins [BR:
rhrc03400
]
P0M12_23910 (ligA)
Enzymes [BR:
rhrc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P0M12_23910 (ligA)
DNA replication proteins [BR:
rhrc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P0M12_23910 (ligA)
DNA repair and recombination proteins [BR:
rhrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P0M12_23910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P0M12_23910 (ligA)
MMR (mismatch excision repair)
DNA ligase
P0M12_23910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P0M12_23910 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
WEX02672
LinkDB
All DBs
Position
5096626..5098728
Genome browser
AA seq
700 aa
AA seq
DB search
MTETADAMQPAPNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQY
PDLRTPDSPTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKVEQETGPELHYL
CEVKIDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLL
EVRGEVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFG
RMEGFEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVV
KVDEMSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVAGVRDGTEREFVMPTHCP
ECGTLLAPAKEGDVDVRCPNQQYCPAQLRERVFHVSGRGAFDIEVLGYEAATGLLEAKVI
GDEGDLFSLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWFSVDWHQQIVDKWASAGVR
MEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKEAILVRGGKAAGSVSKKTAFVVVGEAP
GSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAPTDLDESE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaaccgcggatgcaatgcagccagcgcccaacgaggcgcgcgagcagtggacg
gagctggccgaagaggtacgccagcatcagttccgctactacgttcgtgatgcgcccgtc
atttcggacggtgcattcgacacattgctcgggcagctcaatgctctcgaagagcagtac
ccggatctgcgaactcccgactctccgacgcaactcgtcggtggcggattcgcgacggac
ttcacgtccgtcgaccacctcgagcggatgctcagcctcgacaacgtcttcgacgagtcg
gagctccgagcatggatcgccaaggtagagcaggaaaccgggccggaactgcactatctc
tgtgaagtgaaaatcgatggtgtcgccctcaatctcgtctacgagaacggcaaactcgtt
cgtgccgcaacccgcggtgacggtcgtacgggcgagctggtcacgctcaacgccttgacg
atcaacgacatcccggagcgccttaccgccacggacgagtacccgattccgagcctgctc
gaggtgcgtggcgaggtgttcttccgcctcgaggacttcgcagcactcaatgcctccctg
gtggaggaggggaaggcgccgttcgccaatccgcgcaactccgcggcgggctccctgcgt
cagaagaatcctgccgtcaccgcgcgtcgccgcctcggaatgatctgccacgggttcggg
cgcatggaaggtttcgagccggcctcgcagtacgacgcctacgtggccctcgccgcctgg
ggtctgccggtgtccacgcacacctcacgggtggtcggcgccgacgccgtggtcgagaag
atgaagtactggggagaacaccgccacgacgtcgagcacgagatcgacggattggtggtc
aaggtagacgagatgtcgttacatcgacgtctgggcaccacgtcgcgcgcaccacggtgg
gctatcgcgtacaagtacccgccggaagaggtcacgaccaagctcctcgacatccgggtc
agtgtcggacgtacgggtcgtgtgacgccgttcgcgtacatggaacccgtcacggtggcg
ggttccactgtgtccttggccacgctgcacaacggatccgaggtcaagcgcaagggtgtg
ctgatcggcgacaccgtggtgttgcgtaaggccggagacgttatccccgaggtcctcggg
cccgtggcaggcgttcgtgacggtaccgagcgcgagttcgtcatgccgacgcattgtccc
gagtgcggcacgttgttggcacccgcgaaagagggcgacgtcgacgtgcgatgccccaat
cagcagtactgtccggcgcagttgcgcgagcgcgtgttccacgtctcggggcgcggtgca
ttcgacatcgaggtgctcgggtacgaggccgcgaccgggctgttggaggcgaaggtcatc
ggtgacgagggtgatctcttctcactcgacgccgagaaactgatcgaagttccgatcttc
cgcaccaatgcgggatccctgtccgccaacggaaaacgcttgctggccaacctggattcg
gcaaaggacaagccgctgtggagagtgcttgtggcactgtcgattcggcacgtcggcccc
actgccgcgagggcgttggccggcgaattcggctcgctgcaacgcattcgggaagcctcg
gtcgacgagttggctgcagtcgacggcgtcggatcgactatcgccgccgccgtcgtggag
tggttctccgtcgactggcaccagcagatcgtcgacaagtgggcgtcggccggagtacgc
atggaggacgaacgcgacgattcgattccgcgcaatctcgagggtctctcgatcgtcgtc
accggttcgctcgagacctactcgcgtgatcaggcgaaggaagcgattctggtgcgcggc
ggcaaggcggcagggtcggtctcgaagaagactgcgtttgtcgtcgtcggtgaagcgccc
ggttccaagcacgacaaggcggtcgaattgggtgtgccggtgctcgacgaagacggcttc
cggcggttgctcgaagatggcccggatgcggtcgctcccaccgatttggacgaatcagag
tga
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