KEGG   Rhodococcus sp. WMMA185: BFN03_05270
Entry
BFN03_05270       CDS       T04814                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rhw  Rhodococcus sp. WMMA185
Pathway
rhw03030  DNA replication
rhw03410  Base excision repair
rhw03420  Nucleotide excision repair
rhw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rhw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BFN03_05270
   03410 Base excision repair
    BFN03_05270
   03420 Nucleotide excision repair
    BFN03_05270
   03430 Mismatch repair
    BFN03_05270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhw03032]
    BFN03_05270
   03400 DNA repair and recombination proteins [BR:rhw03400]
    BFN03_05270
Enzymes [BR:rhw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BFN03_05270
DNA replication proteins [BR:rhw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BFN03_05270
DNA repair and recombination proteins [BR:rhw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BFN03_05270
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BFN03_05270
   MMR (mismatch excision repair)
    DNA ligase
     BFN03_05270
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BFN03_05270
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT Nlig-Ia
Other DBs
NCBI-ProteinID: AOW94458
LinkDB
Position
1171873..1173900
AA seq 675 aa
MAEEVRGHQFRYYVRDAPIISDGEFDALLGELNDLENRYPDLRTPDSPTQLVGGGFSTDF
SSVDHLERMLSLDNVFDEDELRGWIARVEQETGPDLHYLCEVKIDGVALNLVYENGSLVR
AATRGDGRTGEEVTLNARTIDDVPERLTGTDEYPVPALLEVRGEVFFRLEDFEALNAALV
EEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLGRTDGFEPVSQFDAYSALAAWG
LPVSTHTARVAGAAAVLEKVRYWGEHRHDVEHEIDGLVVKVDEMSLQRRLGSTSRAPRWA
IAYKYPPEEATTTLLDIRVNVGRTGRVTPFAYMKPVTVAGSTVSLATLHNGSEVKRKGVL
IGDTVVIRKAGDVIPEVLGPVVEARTGDEREFVMPTNCPECNTLLAPAKEGDADIRCPNQ
QYCPAQLRERVFHVAGRGAFDIEVLGYEAATSLLEARAIGDEGDLFSLTEDDLLKTSLFR
TKAGGLSANGRRLLDNLESAKDKPLWRVLVALSIRHVGPTAARALAGEFGSLERIRRSSV
EELAAVDGVGGTIAAAIAEWFGVDWHRQIVEKWSAAGVRMEDERDESIPRNLEGLSIVVT
GSLETFSRDAAKEAILVRGGKAAGSVSKKTAFVVVGESPGSKHDKAVELGVPILDEEGFR
RLLSGGPEAVTDPQM
NT seq 2028 nt   +upstreamnt  +downstreamnt
ctggcagaggaggtgcgtgggcaccagttccgctattacgttcgtgacgcacccatcatc
tccgacggcgagttcgacgcgctgctcggcgaactgaacgatctcgagaaccggtatccg
gacctgcgcacgcctgattcgccgacacaacttgtcgggggtggtttctcgaccgacttc
agctccgtcgaccacctcgagcggatgctcagcctcgacaacgtcttcgacgaagacgag
ttgcggggttggatcgcccgggtcgaacaagagaccgggcccgacttgcactacctgtgc
gaggtcaagatcgatggtgttgcgctcaatctcgtctacgagaacggcagtctggtgcgc
gccgcgacgaggggcgacggccggacgggcgaagaagtcacgctcaacgctcggactatc
gacgatgtaccggaaaggctcaccggcacagacgaatacccggtacccgcacttctcgag
gtgcgaggtgaagtgttcttccgcctcgaggacttcgaggcgctcaacgcagcactcgtc
gaggaaggcaaggcgccgttcgcgaatccccggaactcggccgccgggtcgctgcgccag
aagaatcctgccgttacggctcgccgccgcctcgggatgatctgtcacggactcggccgg
accgacgggttcgaacccgtctcgcaattcgacgcgtacagcgcgctcgccgcgtggggt
ctgccggtgtccacccacaccgcgcgtgtcgcaggtgcagcagccgtcctggagaaggtg
cggtactggggtgagcaccgccacgacgtggaacacgagatcgacggcctggtggtgaag
gttgacgagatgtctctgcagcgtcggctgggctcgacgtcgcgggcgccgcgctgggcg
atcgcctacaagtaccctccggaggaggcgaccacaaccttgctcgatatccgggtgaat
gtgggacgcacaggcagggtcacccccttcgcgtacatgaaacccgtcacggtcgccggg
tccacggtctcgctcgccacgttgcacaacggctcggaggtcaagcgcaagggtgtgctc
atcggcgacaccgtggtaatccgcaaggcgggggacgtgattcccgaggtcctcggtccg
gtggtcgaggccaggaccggtgacgagcgcgagttcgtgatgccgacgaactgcccggag
tgcaatacgctgctggcccccgccaaggagggggatgcggacatccgctgccccaatcag
caatactgccccgcgcaactgcgagagcgcgtgttccacgtggccggtcgcggggcgttc
gacatcgaggtactcggatacgaggcggccacgagcctgctcgaggcgcgggcaatcgga
gacgagggcgacctgttctcgctcaccgaggacgatctgctgaaaacgtcgctcttccgt
accaaggccggcgggttgtcggcgaatggccgaagactgctcgacaacctcgaatccgcc
aaggacaagccgctgtggcgggtactggtcgccctgtcgatccgccacgtcggcccgacg
gcggcccgggcactggcaggagaattcggttcgctcgagcgcatccgccgcagttccgtc
gaggaactcgcagcagtggacggggtcggcggcacgattgccgcggcgattgccgaatgg
tttggagtcgactggcacaggcagatcgtggagaagtggtcggcggccggtgtgcgcatg
gaggacgagcgcgacgaatcgattcctcgcaacctcgaaggcttgtccatcgtcgtcaca
ggttccctggagaccttctcgcgggacgcggcgaaagaggcgatcctcgtccggggcggc
aaggcggcgggctcggtatcgaagaagacggctttcgtcgtcgtcggggaatcgccgggt
tcgaagcacgacaaggccgtcgaactcggggtgccgatcctcgacgaggagggctttcgg
agactgctctcaggtggtccggaggcggtcaccgatccgcaaatgtga

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