Rhodococcus sp. WB9: FND50_14885
Help
Entry
FND50_14885 CDS
T11350
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhwb Rhodococcus sp. WB9
Pathway
rhwb03030
DNA replication
rhwb03410
Base excision repair
rhwb03420
Nucleotide excision repair
rhwb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhwb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FND50_14885 (ligA)
03410 Base excision repair
FND50_14885 (ligA)
03420 Nucleotide excision repair
FND50_14885 (ligA)
03430 Mismatch repair
FND50_14885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhwb03032
]
FND50_14885 (ligA)
03400 DNA repair and recombination proteins [BR:
rhwb03400
]
FND50_14885 (ligA)
Enzymes [BR:
rhwb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FND50_14885 (ligA)
DNA replication proteins [BR:
rhwb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FND50_14885 (ligA)
DNA repair and recombination proteins [BR:
rhwb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FND50_14885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FND50_14885 (ligA)
MMR (mismatch excision repair)
DNA ligase
FND50_14885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FND50_14885 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Auto_anti-p27
DUF8259
Motif
Other DBs
NCBI-ProteinID:
QDQ91987
LinkDB
All DBs
Position
3220956..3223046
Genome browser
AA seq
696 aa
AA seq
DB search
MSESTEAPTPAPGHIREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQY
PDLRTPDSPTQLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRVEQETGPDLHYL
CEVKIDGVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTGEYPVPALL
EVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLG
RSEGFEPVSQYDAYTALAAWGLPVSTHIARVTGADAVVDRVQYWGEHRHDVEHEIDGLVV
KVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPTHCP
ECDTPLAPAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAATSLLEAKAI
GDEGDLFSLTEDDLLKTSLFRTKAGGLSANGRRLLDNLDSAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLERIRQSSVEELAAVDGVGGTIAAAVAEWFGVDWHQQIVEKWSAAGVR
MEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAILVRGGKAAGSVSKKTAYVVVGESP
GSKHDKAVELGVPVLDEDGFRRLLEGGPDAVADSGV
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaatcgaccgaagccccgacaccggcccccggacacattcgggagcactggaac
gagctggccgaggaagtgcggcagcaccagttccgctattacgtccgcgacgcgcccatc
atctccgacggagagttcgacgtgctgctgggcgaactgaacgacctcgagaaccagtac
cccgacctgcggacgcccgattcgccgacacaactcgtcggcggcggtttcgccaccgac
ttcgcctccgccgatcatctcgagcggatgctgagtctcgacaacgtctttgccaccgac
gaactgcgcacctggatcagccgggtggagcaggagaccggccccgacctgcactacctg
tgcgaggtgaagatcgacggagtcgcgctgaacctggtctacgagaacggccggctcgtc
cgggccgccacgcgaggcgacggccgaaccggtgaagaagtcactctgaacgcgcgaacc
atcgacgacatcccggaaaagctcaccgggacaggcgaatacccggtccccgcgctcctc
gaggtgcgcggcgaggtgttcttccggctcgaggacttcgcggcactcaacgcggcgctc
gtcgaggaaggcaaggcgccgttcgcgaatccccggaactccgcggccgggtcgctgcgg
cagaagaatccggccgtcacggcccgcaggcgcctcggaatgatctgccacggactcggc
cgcagtgaaggattcgagccggtctcccagtacgacgcgtacacggcactggcggcgtgg
ggcctgccggtgtcgactcacatcgcgcgggtcacgggcgctgacgccgtcgtggaccgg
gtgcagtactggggcgagcaccggcacgacgtggagcacgagatcgacggtctggtggtc
aaggtcgacgagacgtcgctgcaacgccggctcgggtccacctcccgggcgccgcgctgg
gcgatcgcctacaagtacccgccggaagaggcaaccaccaagctcctcgacatccgggtc
aacgtcggtcgcaccggccgggtaaccccgttcgcctacatggaaccggtcacggtcgcc
ggctccaccgtctcactcgccaccctgcacaacggctccgaggtcaaacgcaagggcgtg
ctcatcggcgacacggtcgtgctgcgcaaggccggtgacgtcatccccgaggtcctcggg
cccgtggtcgacgcccggacgggcgacgagtacgagttcgtgatgcccacccactgcccg
gagtgcgacacgccgctggcccccgccaaggagggtgacgcggacattcgctgccccaac
cagcagtactgccccgcgcagctccgggaacgcgtgttccacgtcgcgggccgcggcgcg
ttcgacatcgaggtcctcggctacgaggccgcaacgagcctgctcgaggccaaggcgatc
ggcgacgagggagacctgttctcgctcaccgaggacgatctgctcaagacgtcgctcttc
cggaccaaggccggcgggctgtcggccaacggccgccggctgctcgacaatctcgattcc
gccaaggacaagccgctgtggcgggtgctggtcgcgctgtccatccgtcatgtcggaccc
acggcggcgcgtgcgctggccggtgaattcgggtcgctcgagcggatccggcagagctcc
gtcgaggaactcgccgctgtggacggggtcggcggtaccatcgccgcggccgtcgccgag
tggttcggtgtcgactggcaccagcagatcgtggagaagtggtccgcggccggggttcgc
atggaagacgaacgcgacgaatcgattccgcgcaatctcgagggactgtcgatcgtcgtc
acgggttcgctcgagacgttctcgcgcgaccaggcgaaggaggcgatcctcgtccgaggc
ggtaaggccgcgggttcggtgtcgaagaagacggcatacgtggtggtcggcgaatcgccg
ggttcgaagcacgacaaggccgtcgaactcggagtgccggtcctcgacgaggacgggttc
cgtcgactgctggagggcggaccggacgcggtcgcggattccggagtgtga
DBGET
integrated database retrieval system
