Rhodoferax koreensis: RD110_13020
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Entry
RD110_13020 CDS
T04721
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhy
Rhodoferax koreensis
Pathway
rhy03030
DNA replication
rhy03410
Base excision repair
rhy03420
Nucleotide excision repair
rhy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RD110_13020 (ligA)
03410 Base excision repair
RD110_13020 (ligA)
03420 Nucleotide excision repair
RD110_13020 (ligA)
03430 Mismatch repair
RD110_13020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhy03032
]
RD110_13020 (ligA)
03400 DNA repair and recombination proteins [BR:
rhy03400
]
RD110_13020 (ligA)
Enzymes [BR:
rhy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RD110_13020 (ligA)
DNA replication proteins [BR:
rhy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RD110_13020 (ligA)
DNA repair and recombination proteins [BR:
rhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RD110_13020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RD110_13020 (ligA)
MMR (mismatch excision repair)
DNA ligase
RD110_13020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RD110_13020 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
APW38002
UniProt:
A0A1P8JW72
LinkDB
All DBs
Position
2782998..2785070
Genome browser
AA seq
690 aa
AA seq
DB search
MSSSDQKSPEAQMNPAQAAIEIEAFRTQLDAWSHAYYVLDAPSVPDAEYDRVFRALQALE
AAHPELLTPDSPTQRVGGQPLPFFTPVRHAVPMLSIRTETDTEATGAQAFDTRVRKELGL
APDAPAVGYVAELKFDGLAMNLRYERGLLVQAATRGDGSVGEDVTQNIKTIRQIPLRLPK
DAPAVLEVRGEVYMKRAAFDALNEKQREKGEKTFVNPRNAAAGAVRQLDPAIAAQRPLSF
FAYGLGEITPAEQGGPDFQSHFQLLLTLKSWGFPVAAQVETAQGASELIAYHQKIGAERD
QLPYDIDGVVYKVDSLALQRQLGFVSREPRWAVAHKYPAQEQMTPVQGIDIQVGRTGKLT
PVARLAPVFVGGVTVTNATLHNLFEIRRKGVRVGDTAIVRRAGDVIPEVVGVVPTPRPHY
VPNFRMPRQCPVCGSAVVREPGEVNHRCTGGLFCAAQRKEAILHFAQRRAVEVEGLGDKL
VDQLVEGGLIRTLPDLYKLGFTALAALDRMADKSAQNIVAALEKSKHTTLPRFLFGLGIR
HVGEATAKELARHFGKLDAVMDASVEQLLEVADVGPIVAQSIVTFFAQPHNREVVEQLRA
AGVTWEEGEPAAVAPKPLAGQTFVLTGTFPTLTREEAKERLENAGAKVAGSVSKKTSYVV
AGEEAGSKLDKALALGVAVIDEAAMLALLG
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagttcctctgatcaaaaaagccctgaagcgcagatgaatccggcgcaagctgctatc
gaaatcgaagcgtttcgcacccagctcgacgcctggtcccacgcctactacgtgctcgac
gcgcccagcgtgcccgatgccgaatacgaccgcgtgttccgcgcgttgcaggccctggag
gccgcgcatcccgagctgctcacgcccgactcgccgacccagcgcgtgggtggccagccg
ctgcctttcttcaccccggtgcgtcacgccgtgcccatgctcagcatccgcaccgagacc
gacaccgaggccacgggcgcgcaggcgttcgacacgcgggtgcgcaaggagctcggcctg
gcgccggacgcgccggccgtgggctacgtagccgaactcaagttcgacggcctggcgatg
aacctgcgctacgagcgcggcctgctggtgcaggctgcgacgcgcggcgacggcagcgtg
ggcgaagacgtcacgcagaacatcaagaccatccggcaaatcccactcaggttgccgaag
gacgcgccagccgtgctcgaggtgcgcggcgaggtctacatgaagcgcgcggccttcgat
gcgctcaacgagaagcagcgcgaaaagggcgagaagaccttcgtcaacccgcgcaacgcc
gcggccggcgctgtgcggcaactcgacccggccatcgcggcgcagcgcccgctgagtttc
ttcgcctatggcctgggcgagatcacgccggccgagcagggcggccccgacttccagagc
catttccagttgctgctcacgctgaaatcatggggatttccggtggcagcgcaggtggag
acggcgcagggtgcttctgaattgatagcataccaccagaagatcggcgccgagcgcgac
cagctgccgtacgacatcgacggtgtcgtctacaaggtcgacagcctggcactgcagcgc
cagcttggcttcgtctcgcgcgagccgcgctgggccgtggcccacaaataccccgcgcag
gaacagatgacgccggtgcagggcatcgacatccaggtcggtcgcaccggcaagctcacg
ccggtggcacggctggcgccggtcttcgtcggcggcgtgacggtgaccaatgccacgctg
cacaacctgttcgagatccgccgcaagggcgtgcgggtgggagacacggccatcgtgcgg
cgcgccggcgacgtgatccccgaggtcgtcggtgtggtgccgacgccgcgacctcattac
gtgcccaacttccgcatgccgcgccaatgcccggtctgcggcagtgccgtggtgcgcgag
ccgggcgaagtcaaccaccgctgcaccggcggcctgttctgcgcggcgcagcgcaaggag
gccatcctgcatttcgcgcagcggcgcgcggtcgaggtcgaaggcctgggtgacaaactc
gtcgaccagctcgtcgaaggcggcctgatccgcaccttgcccgacctctacaaactcggc
ttcaccgccctggccgcgctcgaccgcatggccgacaagtcggcgcagaacatcgtcgcc
gcgctcgaaaaatccaagcacaccacgctgccgcgcttcctgttcggcctgggcatccgc
catgtgggcgaggccacggcgaaggaactggcgcggcatttcggcaaactcgacgcggtg
atggacgccagcgtcgagcagttgctcgaagtggccgacgtcggcccgatcgtcgcgcag
agcatcgtcaccttctttgcccagccgcacaaccgcgaggtcgtcgagcaactgcgcgcg
gccggcgtcacctgggaagagggcgagcccgccgccgtggcgccgaagccgctggccgga
cagaccttcgtgctcaccggcaccttccccacgctgacccgcgaagaagccaaggaacgg
ctggaaaacgccggcgccaaggtggccggctcggtgagcaagaagacgagctacgtcgtc
gccggtgaagaggccggcagcaagctggacaaggcgctggcgctgggggtggcggtgatc
gatgaggcggcgatgctggctttgttgggctag
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