Rhodococcus sp. ZPP: HYG77_28650
Help
Entry
HYG77_28650 CDS
T11458
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhzp Rhodococcus sp. ZPP
Pathway
rhzp03030
DNA replication
rhzp03410
Base excision repair
rhzp03420
Nucleotide excision repair
rhzp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhzp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYG77_28650 (ligA)
03410 Base excision repair
HYG77_28650 (ligA)
03420 Nucleotide excision repair
HYG77_28650 (ligA)
03430 Mismatch repair
HYG77_28650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhzp03032
]
HYG77_28650 (ligA)
03400 DNA repair and recombination proteins [BR:
rhzp03400
]
HYG77_28650 (ligA)
Enzymes [BR:
rhzp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYG77_28650 (ligA)
DNA replication proteins [BR:
rhzp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYG77_28650 (ligA)
DNA repair and recombination proteins [BR:
rhzp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYG77_28650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYG77_28650 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYG77_28650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYG77_28650 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QTJ69121
LinkDB
All DBs
Position
6231051..6233141
Genome browser
AA seq
696 aa
AA seq
DB search
MTESTEAPTPAPGDVRERWNELAEEVRQHQFRYYVRDAPVISDGEFDALLGQLNDLENQY
PDLRTPDSPTQLVGGGFATDFTSVDHLERMLSLDNVFATDELRTWISRVEQEAGADLPYL
CEVKIDGVALNLVYENGRLVRAATRGDGRTGEDVTLNARTIDDIPERLTGTDEYPVPALL
EVRGEVFFRLEDFAALNAALVDEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFG
RIEGFEPVSQYDAYTALAAWGLPVSSHTSRVVGADAVVAKVQYWGEHRHDVEHEIDGLVV
KVDEMLLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDVRTGDEHEFVMPTHCP
ECGTLLAPAKEGDADIRCPNQRYCPAQLRERVFHVAGRGAFDIEVLGYEAATGLLEAGAI
EDEGDLFSITEDDLLKTSIFRTKAGALSANGRRLLDNLDSAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLDRIRQSSVEELAAVDGVGGTIAAAVAEWFGVDWHLQIVEKWAAAGVR
MEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAILVRGGKAAGSVSKKTAYVVVGESP
GSKHDKAVELGVAVLDEDGFRRLLEGGPEAVADSEM
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaatcgaccgaagccccgacacccgcccccggcgacgtacgggagcggtggaac
gaactggccgaggaagtgcggcagcatcagttccgctactacgtccgcgacgcgcccgtc
atttccgacggtgagttcgatgcgctgctcggacagttgaacgacctcgagaaccaatac
ccggacctgcgcacccccgactcgccgacccaactcgtcggcggcggcttcgcgaccgat
ttcacctccgtcgaccacctcgagcgcatgctcagtctcgacaacgtgttcgccaccgac
gagttgcgcacctggatcagccgggtggaacaggaggcgggcgccgatctgccctacctc
tgcgaggtgaagatcgacggcgtcgcactcaacctcgtgtacgagaacggccgactcgtg
cgcgcagccactcgcggtgacgggcgcacgggcgaggacgtcacactcaacgcacgcacg
atcgacgatattccggaaagactcaccggcacagacgaatacccggttcccgccttgctc
gaggtgcgcggcgaggtgttcttccggctcgaggatttcgcggctctcaacgccgcgctc
gtcgacgaaggcaaggcgcccttcgcgaatccccgcaactccgcagccggctcgctgcgg
cagaagaatcccgcggtcactgcccgtcgccgtctcggaatgatctgtcacggtttcggc
cggatcgaagggttcgagcccgtctcgcagtacgacgcctacacggcgctggccgcgtgg
ggtctgcccgtctcctcacacacctcccgtgtcgtgggcgccgacgcggtggtggcgaag
gtccagtactggggcgaacaccggcacgacgtcgagcacgaaatcgacggactggtggtg
aaggtcgacgagatgttgctgcaacgccggctcggttccacctcgcgagccccgcggtgg
gcgatcgcgtacaaatacccgcccgaggaagccaccaccaagctcctcgacatccgggtc
aatgtggggcggacgggacgggttacacctttcgcctacatggaaccggtcaccgtcgcc
ggttccaccgtgtcactcgccaccctgcacaacggctccgaggtcaagcgcaagggtgtc
ctgatcggtgacaccgtggtgatccgcaaggctggtgacgtcatcccagaggttctgggc
cccgtcgtcgacgtgcgtactggcgacgagcacgagttcgtcatgccgacgcactgcccc
gagtgcggcaccctcctggccccggccaaggagggggatgccgacatccgctgccccaat
cagcgctactgtcccgcgcagctccgcgagcgggtcttccacgtcgcgggccgcggcgcg
ttcgacatcgaggtgctcggttacgaggccgcgacggggctgctcgaggccggggcgatc
gaggacgagggtgacctgttctcgatcacggaggacgatctcctgaagacgtcgatcttc
cgaaccaaggcgggggctctctccgccaacggccggcggctcctcgacaacctcgactcc
gcgaaggacaaaccgctgtggcgggtgctcgtggcattgtcgattcgtcatgtgggaccc
acggctgcccgtgcgcttgccggcgagttcggttcgctcgatcggatccgccagagttct
gtcgaggagttggcggcagttgacggcgtgggcggcaccatcgccgccgcggtcgcggaa
tggttcggagtcgactggcatctgcagatcgtcgagaagtgggcggcggccggggtgcgc
atggaagatgaacgtgacgaatcgatcccgcgcaacctcgaaggcttgtcgatcgtggtg
accggatcactcgagacgttctcgcgtgatcaggccaaggaagccatcctcgtccgaggc
ggcaaggccgcgggttcggtgtcgaagaagacggcctatgtggtggtcggggaatcaccg
ggctcgaagcatgacaaggccgtcgaactcggtgttgctgttctcgacgaggacggattc
cggcgactgctcgaaggtgggccggaggctgtggccgattcggagatgtga
DBGET
integrated database retrieval system
