Rhodococcus sp. 21391: GO592_17155
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Entry
GO592_17155 CDS
T10971
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhzq Rhodococcus sp. 21391
Pathway
rhzq03030
DNA replication
rhzq03410
Base excision repair
rhzq03420
Nucleotide excision repair
rhzq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhzq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GO592_17155 (ligA)
03410 Base excision repair
GO592_17155 (ligA)
03420 Nucleotide excision repair
GO592_17155 (ligA)
03430 Mismatch repair
GO592_17155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhzq03032
]
GO592_17155 (ligA)
03400 DNA repair and recombination proteins [BR:
rhzq03400
]
GO592_17155 (ligA)
Enzymes [BR:
rhzq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GO592_17155 (ligA)
DNA replication proteins [BR:
rhzq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GO592_17155 (ligA)
DNA repair and recombination proteins [BR:
rhzq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GO592_17155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GO592_17155 (ligA)
MMR (mismatch excision repair)
DNA ligase
GO592_17155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GO592_17155 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Auto_anti-p27
DUF8259
Motif
Other DBs
NCBI-ProteinID:
QQZ17665
LinkDB
All DBs
Position
complement(3674076..3676166)
Genome browser
AA seq
696 aa
AA seq
DB search
MSESTEAPTPAPGHIREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQY
PDLRTPDSPTQLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRVEQETGPDLHYL
CEVKIDGVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDEYPVPALL
EVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLG
RSEGFEPVSQYDAYKALAAWGLPVSTHTARVTGADAVVDRVQYWGEHRHDVEHEIDGLVV
KVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPTHCP
ECDTPLAPAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAATSLLEAKAI
GDEGDLFSLTEDDLLKTSLFRTKAGGLSANGRRLLDNLDSAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLERIRQSSVEELAAVDGVGGTIAAAVAEWFGVDWHQQIVEKWSAAGVR
MEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAILVRGGKAAGSVSKKTAYVVVGESP
GSKHDKAVELGVPVLDEDGFRRLLEGGPDAVADSGV
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaatcgaccgaagccccgacaccggcccccggacacattcgggagcactggaac
gagctggccgaggaagtgcggcagcaccagttccgctattacgtccgcgacgcgcccatc
atctccgacggagagttcgacgtgctgctgggcgagctgaacgacctcgagaaccagtac
cccgacctgcggacgcccgattcgccgacacaactcgtcggcggcggtttcgccaccgac
ttcgcctccgccgatcatctcgagcggatgctgagtctcgacaacgtcttcgccaccgac
gaactgcgcacctggatcagccgggtggagcaggagaccggcccagacctgcactacctg
tgcgaggtgaagatcgacggagtcgcgctgaacctggtctacgagaacggccggctcgtc
cgggccgccacgcgcggcgacggccgaaccggtgaagaagtcactctgaacgcgcgaacc
atcgacgacatcccggaaaagctcaccggcacagatgaatacccggtccccgcgctcctc
gaggtgcgtggcgaggtgttcttccggctcgaggacttcgcggcactcaacgcggcgctc
gtcgaggaaggcaaggcgccgttcgcgaatccccggaactccgcggccgggtcgctgcgg
cagaagaatccggccgtcacggcccgcaggcgcctcggaatgatctgccacggactcggc
cgcagtgaaggattcgagccggtctcccagtacgacgcgtacaaggcactggcggcgtgg
ggcctgccggtgtcgactcacaccgcgcgtgtcacgggcgcggacgccgtcgtggaccgg
gtgcagtactggggcgagcaccggcacgacgtggagcacgagatcgacggtctggtggtc
aaggtcgacgagacgtcgctgcaacgccggctcgggtccacctcccgggcgccgcgctgg
gcgatcgcctacaagtacccgccggaagaggcaaccaccaagctcctcgacatccgggtc
aacgtcggtcgcaccggccgggtaaccccgttcgcctacatggaaccggtcacggtcgcc
ggctccaccgtctcactcgccaccctgcacaacggctccgaggtcaaacgcaagggcgtg
ctcatcggcgacacggtcgtgctgcgcaaggccggtgacgtcatccccgaggtcctcggg
cccgtggtcgacgcccggacgggcgacgagtacgagttcgtgatgcccacccactgcccg
gagtgcgacacgccgctggcccctgccaaggagggtgacgcggacattcgctgccccaac
cagcagtactgccccgcgcagctccgggaacgcgtgttccacgtcgcgggccgcggcgcg
ttcgacatcgaggtcctcggctacgaggccgcaacgagcctgctcgaggccaaggcgatc
ggcgacgagggagacctgttctcgctcaccgaggacgatctgctcaagacgtcgctcttc
cggactaaggccggcgggctgtcggccaacggccgccggctgctcgacaatctcgattcc
gccaaggacaagccgctgtggcgggtgctggtcgcgctgtccatccgtcatgtcggaccc
acggcggcgcgtgcgctggccggtgaattcgggtcgctcgagcggatccggcagagctcc
gtcgaggaactcgccgctgtggacggggtcggcggcaccatcgccgcggccgtcgccgag
tggttcggtgtcgactggcaccagcagatcgtggagaagtggtccgcggccggggttcgc
atggaagacgaacgcgacgaatcgattccgcgcaatctcgagggactgtcgatcgtcgtc
acgggttcgctcgagacgttctcgcgcgaccaggcgaaggaggcgatcctcgtccgaggc
ggtaaggccgcgggttcggtgtcgaagaagactgcatacgtggtggtcggcgaatcgccg
ggttcgaagcacgacaaggccgtcgaactcggagtgccggtcctcgacgaggacgggttc
cgtcgactgctggagggcggaccggacgcggtcgcggattccggagtgtga
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integrated database retrieval system
