Roseovarius indicus: RIdsm_02669
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Entry
RIdsm_02669 CDS
T06222
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rid
Roseovarius indicus
Pathway
rid03030
DNA replication
rid03410
Base excision repair
rid03420
Nucleotide excision repair
rid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIdsm_02669 (ligA)
03410 Base excision repair
RIdsm_02669 (ligA)
03420 Nucleotide excision repair
RIdsm_02669 (ligA)
03430 Mismatch repair
RIdsm_02669 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rid03032
]
RIdsm_02669 (ligA)
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_02669 (ligA)
Enzymes [BR:
rid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RIdsm_02669 (ligA)
DNA replication proteins [BR:
rid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIdsm_02669 (ligA)
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RIdsm_02669 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIdsm_02669 (ligA)
MMR (mismatch excision repair)
DNA ligase
RIdsm_02669 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIdsm_02669 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QEW26863
UniProt:
A0A0T5PAH2
LinkDB
All DBs
Position
2795806..2797926
Genome browser
AA seq
706 aa
AA seq
DB search
MAQKPEVDDLSEEQATKELADLAQQLAEANTAYHTEDAPRISDAEYDALKARNAAIEDRF
PHLKRADSPSDQVGAAPSEAFAKVTHAVRMLSLGNAFDDADITEFDTRIRRYLGLGDDAK
LTYTAEPKIDGLSLSLRYESGKLVQAATRGDGAVGENVTANARTIDDIPVKIDGAPDVLE
IRGEVYMSHADFEALNARQAERSDKQFANPRNAAAGSLRQLDSSITRSRPLRFFAYAWGE
VSEPLADTQMAAINRLSDLGFQTNPLTELCDGPSEMLVQYAKIEQLRAELGYDIDGVVYK
IDDLALQSRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGG
VVVSNATLHNEDYIAGRDSKGNEIRGGKDIREGDWVQVYRAGDVIPKVADVDLSKRPDDA
QPYTFPETCPECGSEAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQV
EQFYRDGWIKEPADIFTLEERYGSGPRQLKNREGWGEKSAKNLFEAIEEKRNIPFGRLLF
ALGIRHVGEQASNLLARFYGNWDDFTAAMDSAADCDGPEWERLLGIDGVGEVMARSLVTA
FAQDNERDSIDRLTRHLTVEETARPATEGSPVAGKTIVFTGTLEKMTRAEAKARAEALGA
KVSGSVSAKTDLVVAGPGAGSKGKKAEELGVEIIDEDGWLDLVGAS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaaacccgaggtcgacgacctgagcgaggaacaggccacgaaagaactggcc
gacctggcgcagcaactggccgaggcgaacaccgcctaccacaccgaagacgcgccccgc
atcagcgatgcggaatatgacgccctcaaggcccgcaatgcggccatcgaagaccgtttc
ccccatctcaaacgcgccgacagcccgtcagaccaggtcggcgccgcgccctccgaagcc
ttcgccaaggtcacccacgcggtgcgcatgctcagcctcggcaacgccttcgacgacgcc
gacatcaccgaattcgacacccgcatccgccgctacctcggcctcggcgacgacgcgaaa
ctcacctacaccgccgagcccaagatcgacgggctcagcctttcgctgcgctacgagtcc
ggcaagctcgtgcaggccgccacccgcggcgacggcgcggtgggcgagaacgtcaccgcc
aacgcccgcaccatcgacgacatccccgtcaagatcgacggcgcccccgacgtgctcgaa
atccgcggcgaggtctacatgagccacgccgatttcgaggcgctcaacgcgcggcaggcc
gaaaggtctgacaagcaattcgccaacccccgcaacgccgccgccggctccctccgccag
ctcgactcctccatcacccgcagccgcccgctgcgcttcttcgcctatgcctggggcgag
gtcagcgaaccgctcgccgacacccagatggccgccatcaaccggctctccgacctcggc
ttccagaccaatccgctcaccgaactctgcgacgggccatccgaaatgctcgtccaatac
gccaagatcgagcaactccgcgccgagctcggctacgatatcgacggcgtcgtctacaaa
atcgacgacctcgccctgcagagccgcctcggcttccgcagcaccaccccccgctgggcc
atcgcccataaattccccgccgagctcgcctggacccggcttgaggccatcgacatccag
gtcggccgcaccggcgccctcagccccgtcgcccgcctgacccccgtcaccgtcggcggc
gtcgtcgtctccaacgccacgctccataacgaggattacatcgccggccgcgacagcaag
ggcaacgaaatccgcggcggcaaggatatccgcgaaggcgactgggtgcaggtctaccgc
gccggcgacgtcatcccgaaagtcgccgatgtcgacctctcgaaacgccccgacgacgcg
caaccctataccttccccgaaacctgccccgaatgcggctccgaggccatccgcgaggaa
ggcgacgccgtccgccgctgcaccggcggcctcatctgcccggcgcaagcggttgaaaaa
ctgaaacatttcgtctcccgcgccgccttcgacatcgaagggctcggcgccaaacaggtc
gaacaattctaccgcgacggctggatcaaggaacccgccgacatcttcacactggaagag
cgctacggctcgggcccacgccaactcaagaaccgcgaaggctggggtgagaaaagcgcg
aagaacctcttcgaagccattgaagaaaaacgaaacatccccttcggccgcctcctcttc
gccttgggcatccgccatgtcggcgaacaggccagcaaccttctcgcccgcttctacggc
aattgggacgatttcaccgccgccatggacagcgccgccgattgcgacggccccgaatgg
gaacgcctcctcggcatagacggggtgggcgaggtcatggcgcgctccctcgtcaccgcc
ttcgcgcaggacaacgagcgcgacagcatcgaccgcctgacccgacacctcaccgtcgag
gaaaccgcccgcccggcaacggagggcagccccgtcgccggcaagaccatcgtcttcacc
ggcacgctcgagaaaatgacccgggccgaggccaaggcccgcgccgaggccttgggcgcc
aaggtctcgggcagcgtcagcgcgaaaaccgacctcgtcgtcgcgggccccggtgccggc
agcaagggcaagaaagccgaggaactgggcgtcgagatcatcgacgaagacggctggctc
gacctcgtaggcgcctcatga
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