Roseovarius indicus: RIdsm_05079
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Entry
RIdsm_05079 CDS
T06222
Symbol
nth
Name
(GenBank) Endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
rid
Roseovarius indicus
Pathway
rid03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RIdsm_05079 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_05079 (nth)
Enzymes [BR:
rid01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RIdsm_05079 (nth)
DNA repair and recombination proteins [BR:
rid03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RIdsm_05079 (nth)
Prokaryotic type
RIdsm_05079 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QEW29236
UniProt:
A0A0T5PDV8
LinkDB
All DBs
Position
complement(5213680..5214324)
Genome browser
AA seq
214 aa
AA seq
DB search
MAAQLDYHTMREIFTRFREAEPEPKGELHHVNAFTLVVAVALSAQATDAGVNKATAELFK
IADTPEKMLALGEEGLIAHIKTIGLYRNKAKNVMKLSRILAEEYGGEVPNSRAALQSLPG
VGRKTANVVLNMWWRYPAQAVDTHIFRVGNRTGICPGKDVNAVERAIEDNVPVDFQLHAH
HWLILHGRYHCKARKPMCATCLIRDLCQFEEKTL
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacagcttgactatcatacgatgcgcgagatcttcacccggttccgcgaggcg
gagccggagccgaagggcgagctgcatcatgtgaacgccttcacgctggtcgtggcggtg
gcgctgtcggcgcaggcgacggatgcgggggtgaacaaggccaccgcggagctgttcaaa
atcgccgacacgcccgagaagatgctggctttgggcgaggaggggctgatcgcgcatatc
aagacgatcgggctttaccgcaacaaggcgaagaacgtcatgaagctgtcgcgcatcctg
gccgaagagtatggcggcgaggtgcccaattcgcgggcggcgctgcaatcgctgcccggc
gtggggcggaagacggcgaacgtggtgctcaacatgtggtggcggtacccggcacaggcg
gtggatacgcatatcttccgtgtcggcaaccgcacgggtatctgcccgggcaaggacgtc
aacgccgtcgagcgcgccatcgaggacaacgtgccggtcgacttccagcttcacgcgcat
cactggctgatcctgcacggccggtaccactgcaaggcgcgcaaaccgatgtgcgccacc
tgtctcattcgagatctctgccaattcgaggaaaaaactctatga
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