Rhizophagus irregularis: OCT59_001919
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Entry
OCT59_001919 CDS
T10295
Name
(RefSeq) Sm-like protein lsm3b
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
rie Rhizophagus irregularis
Pathway
rie03018
RNA degradation
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_001919
09123 Folding, sorting and degradation
03018 RNA degradation
OCT59_001919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_001919
03041 Spliceosome [BR:
rie03041
]
OCT59_001919
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OCT59_001919
mRNA degradation factors
5'-3' decay
Lsm complex
OCT59_001919
Spliceosome [BR:
rie03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
OCT59_001919
Complex C
U2 snRNP components
OCT59_001919
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
36866390
NCBI-ProteinID:
XP_025181481
LinkDB
All DBs
Position
10:complement(1869024..1869825)
Genome browser
AA seq
104 aa
AA seq
DB search
MTEETNAAPVEPAAVEEPLDLVRLSLDERIYVKLRGDRELRGKLHAYDGHLNMVLSEVEE
TITIVEINDETYEEVIRTVKRTVEMLFVRGDGVILVSPPVRTGS
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagagactaatgctgctccagtggaacccgctgccgtagaagaaccactcgac
ttagttcgtttatcacttgacgaaagaatatatgtaaagttacgtggagatcgtgaatta
cgcggtaaacttcacgcttatgacggtcatctcaatatggtattgagtgaagttgaagaa
actattacgattgtggaaattaatgatgaaacttatgaagaagtcattcgtactgtaaaa
agaaccgtagaaatgttatttgtacgcggtgacggcgttattctggtttctcctccagtt
agaactggttcataa
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