KEGG   Rhizophagus irregularis: OCT59_001919
Entry
OCT59_001919      CDS       T10295                                 
Name
(RefSeq) Sm-like protein lsm3b
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
rie  Rhizophagus irregularis
Pathway
rie03018  RNA degradation
rie03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OCT59_001919
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OCT59_001919
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rie03019]
    OCT59_001919
   03041 Spliceosome [BR:rie03041]
    OCT59_001919
Messenger RNA biogenesis [BR:rie03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OCT59_001919
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     OCT59_001919
Spliceosome [BR:rie03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    OCT59_001919
 Complex C
  U2 snRNP components
    OCT59_001919
SSDB
Motif
Pfam: LSM RimP_C
Other DBs
NCBI-GeneID: 36866390
NCBI-ProteinID: XP_025181481
LinkDB
Position
10:complement(1869024..1869825)
AA seq 104 aa
MTEETNAAPVEPAAVEEPLDLVRLSLDERIYVKLRGDRELRGKLHAYDGHLNMVLSEVEE
TITIVEINDETYEEVIRTVKRTVEMLFVRGDGVILVSPPVRTGS
NT seq 315 nt   +upstreamnt  +downstreamnt
atgactgaagagactaatgctgctccagtggaacccgctgccgtagaagaaccactcgac
ttagttcgtttatcacttgacgaaagaatatatgtaaagttacgtggagatcgtgaatta
cgcggtaaacttcacgcttatgacggtcatctcaatatggtattgagtgaagttgaagaa
actattacgattgtggaaattaatgatgaaacttatgaagaagtcattcgtactgtaaaa
agaaccgtagaaatgttatttgtacgcggtgacggcgttattctggtttctcctccagtt
agaactggttcataa

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