Rhizophagus irregularis: OCT59_014185
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Entry
OCT59_014185 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
rie Rhizophagus irregularis
Pathway
rie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCT59_014185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_014185
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
OCT59_014185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
SMC_N
AAA_25
Zeta_toxin
Arf
RsgA_GTPase
nSTAND3
nSTAND6
AAA_23
SRP54
VapE-like_dom
FtsK_SpoIIIE
AAA_28
AAA_15
AAA_24
MMR_HSR1
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
36867128
NCBI-ProteinID:
XP_025179660
LinkDB
All DBs
Position
21:3592610..3594087
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AA seq
315 aa
AA seq
DB search
MSNNEELAIDVEDLTFNFGESPVLENVTFKLQKGARCLLVGANGAGKSTLLTILAGKRMV
QDKVLVLGMDAFKDSPLGVTYLGTEWANNPVVKGDVLVSTLISNMKGGIYPERVKELIQI
MDINPKWRMHQISDGERRRVQLVLGLIKPWTLLLMDEITVDLDVLVRSDLLEFLKKETEE
RNATLLYATHIFDGLGDWPTHITHIKRGKIVASHDFHNNFPELDNMMTQQLLINKQQLTN
RQLYRNMGSPLLKVVEQWLREDLRELRLLQAEERKKAEQERDKVLLGEEKPKTKWDILSD
NVDKYGDKYYNYWDH
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataacgaagaattggcaattgatgttgaagacctcaccttcaacttcggcgaa
tctccagttttggagaacgtaacttttaaattgcagaaaggagcacgttgtttattagtt
ggtgctaatggagccgggaaatccactttattgacgatattggcgggaaagagaatggtt
caagataaagtcttagttttgggaatggatgcttttaaagattctccacttggcgtcact
tatctcggtaccgaatgggcaaataaccctgttgttaagggtgacgttttagtctctacc
cttatatccaacatgaaaggtggtatatatcccgaaagagtaaaagaattaattcaaata
atggacattaatccaaaatggcgtatgcaccaaatatccgacggagaaaggcgtagagtg
cagcttgttttaggattaattaaaccctggactttattactcatggatgaaattactgtt
gatttggatgtattggtgcgttcagatttattggaattcttaaaaaaagaaaccgaagag
aggaatgctactttattatatgcaactcatatttttgatggacttggagactggcctact
cacataactcatataaaacgtggaaaaatcgtagcatcccacgattttcataataacttt
ccggaattggacaatatgatgacccaacagcttctaatcaataagcaacaattgacaaac
cgacaattatatagaaatatgggttcaccacttttaaaagttgttgaacaatggttaaga
gaagatttaagagaacttagattgcttcaagctgaagaaagaaaaaaggccgaacaagaa
agagacaaagttttgttaggagaagaaaaaccaaagaccaaatgggacattttatcggat
aatgtggataaatatggcgataaatattataattattgggatcattaa
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