Rhizophagus irregularis: OCT59_029283
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Entry
OCT59_029283 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rie Rhizophagus irregularis
Pathway
rie03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCT59_029283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rie03400
]
OCT59_029283
Enzymes [BR:
rie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OCT59_029283
DNA repair and recombination proteins [BR:
rie03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
OCT59_029283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
RNA_ligase
BRCT
DNA_ligase_IV
PTCB-BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
36869865
NCBI-ProteinID:
XP_025173519
LinkDB
All DBs
Position
9:1147207..1152324
Genome browser
AA seq
931 aa
AA seq
DB search
MTSILDQATQSGSLTQTGVLTSETLLFSDFCRFLEVVSKESGDAKKKKCAKFIQNYRSKY
GNDFYPVMRLLLPHLDKERTNYGMKEMVLAKTYISVMGLAKDSVYAKRLIHWKMPGSSRS
KTAGDFASVAFEVISPRSTVVGRGTMPIEDVNYQLDVLNAASGKQEYQKVIRHFFNDYTA
MEQKWIIRIILKELKIGISEKSIFSLFHPDASNLFNVCSDLRKVCEDLSDPHTRLQISDI
ILYHPFKPMLSKPVAVQNVIKTMGGDFWIEEKIDGERVQLHMKDGRFEYFSRRATQYTYL
YGGSKFEGSLTPYIAELFHPRVKNIILDGEMVVYDPLLDIYKPFGTLKTAGKDHSNDPNK
ERPCFVVFDVVLINDKPVIDQPLQKRNEWLKTLVTEKPGYLRLLSHKEGSTAKDLIDALD
EAVMKRQEGIIIKKPSSKYVLNERIDDWVKIKPEYLDSLGDSLDLLVIGADFGAGRRGNM
FGSFMCGLRDSTSSDDNPKFISFCRFGTGQTMKEAEDIKNNYEGWQRYDPNNHPDWLELG
KDKPHMIIHPENSLVVQVKAAEIVAGNQFASNYTLRFPRFEKIREDKDWESAMNYEEMMN
LRRQASGRLQSRKVTEDDLVTTARAVKRKGKTAAPRRVKKYTMLETFTSNIGPVEEKSMI
FKDMKFHIMLTKYKEYTKSDFERMIKEHGGSYSQHPGSDSEIHLIAEDASNFRVKNLISQ
GVRDIIHPRWITECIDALKLIPLSPKYMVFITESTKQEFLTRMDEWGDSYTDEVTIEDLQ
ETFDLMPLDEETIFSNYPKRQKLADEIEERYFADTGLPNCLFRRCVVYIDYPPPLENINK
LWALYEGCRDRLKLIELTLRYHDAQIVSDFSLSKITHVIFDEKDLSRFNEIKEFHEKRKI
SPYYVRSSWVTDSENCGVLLEENEYIPKISK
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgacttctatcttagaccaagcgactcaaagtggttctttaactcaaacaggcgtgtta
acttctgaaactctgttatttagcgacttttgccgtttcttagaagtagtttctaaagag
agtggagacgcgaaaaagaaaaagtgtgcaaaatttatacaaaattatcgtagtaaatat
ggaaatgatttttatcctgttatgcgtctattacttccacatcttgacaaagaaagaacg
aattatggtatgaaagagatggttcttgccaaaacttatatatctgtcatgggattagcc
aaagattctgtttatgctaaaagattaattcattggaagatgcctggaagctcgagaagt
aaaactgctggtgattttgcatctgtagcatttgaagtaatttctcctcgatctacagtt
gttggtcgtggaacaatgcccattgaagatgtaaattatcaacttgatgttttaaatgca
gctagcggaaaacaagaataccaaaaagtaatacgacatttctttaacgattatactgcc
atggaacaaaaatggattataaggataattttaaaagagctcaagattggaatcagcgaa
aaatcaatattttcattatttcatcccgatgcttctaatcttttcaatgtttgtagcgat
ttgagaaaagtttgtgaagatctaagtgatcctcacactagacttcaaatatcggatatt
attctttatcatccattcaaacctatgctttctaaacccgttgctgttcagaatgttatt
aagactatgggtggtgatttttggatagaagagaaaattgacggagaaagagtacaatta
cacatgaaagatgggagatttgaatatttttcaaggagagccacacagtatacttattta
tatggtggtagtaaatttgaaggttcattaacgccatatatagctgaattgtttcatccg
cgtgttaagaatattattctggatggagagatggtagtatatgatcctttattagatatc
tataagccattcggaactctgaaaaccgccgggaaagatcactccaatgacccaaataaa
gaaagaccttgtttcgtagtatttgatgttgtcttaatcaatgacaagccagtaattgat
caaccattacagaaaagaaacgaatggcttaaaacgttggttactgaaaaaccaggatac
ctgagactccttagtcacaaagaaggcagcacggctaaggatttaattgatgcgttagat
gaagctgttatgaaaaggcaagaaggaattatcattaagaaaccatccagtaaatatgtc
cttaatgaaaggattgatgactgggttaagataaagcccgagtacttggattcccttggc
gatagtttagatttgttagttataggtgcggattttggcgccggaagacgtggaaatatg
ttcggcagttttatgtgtggcctaagagattcaacatcgtcagatgataacccaaagttt
atatcattttgtcgatttggaactggtcagacgatgaaagaagctgaagatattaaaaat
aattatgaaggttggcagcgatatgacccaaataatcatccagattggcttgaacttggt
aaagacaagcctcatatgataattcatccggaaaattcattagtggtacaagttaaagca
gctgaaattgttgctggaaatcagtttgcttccaattatacgcttagatttcctcgattt
gagaaaattcgcgaggataaagattgggaaagtgcaatgaattatgaagaaatgatgaac
cttcgcagacaggcatcaggacgattgcagtccagaaaagttaccgaagatgatttagtt
accaccgcgcgagccgttaagagaaaaggaaagacggcagcaccacgtagagttaagaaa
tacactatgcttgaaacctttacttccaatataggaccggtagaagaaaaatccatgata
tttaaagatatgaaattccacataatgttgacaaaatataaagaatatacaaaatcagat
tttgagcgtatgattaaagaacacggaggtagctattctcaacatcctggctctgattct
gaaattcatttaatagctgaagacgcatcaaactttagagtcaaaaatcttatcagccaa
ggtgtaagagatataattcatcctagatggattacggaatgtattgatgcgttaaagctg
atccccttgagtccaaaatatatggtatttattactgaatcaacaaaacaagaatttttg
acaaggatggacgaatggggagatagttatacggatgaagttactatagaagatttgcag
gagacatttgatttaatgcccttggatgaagaaactatcttttcaaattatccaaagcgt
caaaagttagctgacgagatcgaggaacgttattttgcagatactggattaccaaattgt
ttatttcgtcgttgtgtagtttatatcgattatccgccaccattagaaaatataaacaaa
ttatgggctttatatgaaggatgtcgtgataggttgaagcttattgaattgactcttcgt
taccatgacgctcaaattgtctccgatttttcgttaagtaaaattacccatgtaattttt
gacgaaaaagacttaagtagatttaatgaaataaaggaatttcatgaaaagcgtaaaata
tcaccatattatgtgcgttcttcatgggttacagacagcgagaattgtggagttttacta
gaagagaatgaatatattccaaaaatatcaaaataa
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