Rhizobium indigoferae: U5G49_002939
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Entry
U5G49_002939 CDS
T09660
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rif
Rhizobium indigoferae
Pathway
rif03030
DNA replication
rif03410
Base excision repair
rif03420
Nucleotide excision repair
rif03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U5G49_002939 (ligA)
03410 Base excision repair
U5G49_002939 (ligA)
03420 Nucleotide excision repair
U5G49_002939 (ligA)
03430 Mismatch repair
U5G49_002939 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rif03032
]
U5G49_002939 (ligA)
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_002939 (ligA)
Enzymes [BR:
rif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U5G49_002939 (ligA)
DNA replication proteins [BR:
rif03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U5G49_002939 (ligA)
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U5G49_002939 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U5G49_002939 (ligA)
MMR (mismatch excision repair)
DNA ligase
U5G49_002939 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U5G49_002939 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
FdhE
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
WQN37796
LinkDB
All DBs
Position
complement(2904645..2906801)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTEGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVR
FPELIREDSPSRHVGAAPSVTFSPVIHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIAEIPNELPKGVPAV
VEIRGEVYMAKSDFLALNRQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEMPADTQFGMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLERPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTEVEKVEIQVGRTGALTPVARLKPITV
GGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVIVQRAGDVIPQILDVVMEKRA
ADARPYEFPKTCPVCGSHAVREVNEKTGKMDSVRRCTGGFICRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFENEDASLQIRTAPDIFTLEKRQQQSLTKLENIDGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETGMREAETLAGDAWNDLNAIE
GIGEVVARAIVEFYKEPRNVEVITRLIDEVTPEEAEQPVTTGSPVAGKTVVFTGSLEKFT
RDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALISG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaggttccgccgtcgacacgttgacgatcgaagaggctgccgccgagcta
gaacggctggcaaaggagatcgcgcatcacgatgcgctctaccacggcaaggaccagccg
gagatttcggatgccgattacgacgcgctgaagcgccgcaatgatgcgctcgaggtgcgc
tttcctgagttgatccgcgaagacagcccatcgcggcatgtcggtgcggcgccctccgtc
accttctcgcccgtcatccatgcgcggccgatgctgtcgctcgacaacactttctcgcag
gaggacgtgcaggatttcgtcgccggcgtctatcgcttcctcggccggctgcccgaccag
tcgatcgcctttaccgctgagccgaagatcgacggtctttcgatgtcgatccgttacgag
aacggcaggctggtgacggctgcaacgcgtggcgacggcacgacgggggagaacgtcacc
gccaacatccggaccatcgccgagatccccaacgagctgccgaagggcgtgcccgcggtc
gtggagatccgcggtgaagtctatatggccaagagcgatttcctggcgctgaaccggcag
atggaggcggagggcaagcagacctatgtcaatccgcgcaacaccgcggccggatcgttg
cgccaactcgacgccaaggtgacggcgagccgcaagctgaaattcttcgcttatgcctgg
ggcgagatgtcggagatgcccgccgacacacagttcggtatggtgcagaccttcaaggac
tggggttttcccgtcaatccgctgatgaagcgattgaactcggtcgccgacatcctggcg
cattatgacgagatcggcctcgagcgcccggatctcgactacgacatcgacggcgtcgtc
tataaggtcgacagtctcgagctgcaggctcgtcttggcttccgctcgcgttcgccgcgc
tgggcgacggcgcacaagtttccggcggagcaggccttcaccgaggtcgaaaaggtcgag
attcaggtcggtcgcaccggggcgctgacgccggtggcgcggctgaagccgatcacggtt
ggcggcgtcgtcgtcaccaatgcgacgctgcacaacgaggattacatcaagggcatcggc
aatagcggcgagcgcatccggccggaggaacacgatatccgcgaaggcgataccgtcatc
gtccagcgcgccggcgacgtcattccgcaaatcctcgatgtggtgatggaaaaacgcgcg
gccgacgcccggccatatgaattcccgaagacatgcccggtctgcggttcgcatgccgtg
cgcgaggtcaacgagaagaccggcaagatggattcggtgcgccgctgcaccggtggcttc
atctgccgggcgcaggcgacggagcatttgaagcacttcgtttcgcgcaacgctttcgat
attgaagggctcggttcgaagcagatcgacttcttcttcgaaaacgaggacgcgtcgctg
cagatccgcaccgcgcccgatatcttcacgctggagaagcgccagcagcaatcgctgacc
aagctggagaatattgacggtttcggcaaggtcagcgtcggcaagctctatgcggcgatc
aacgaacggcgcagcattgcgctccaccgcttcatctacgcgctcggcatccgtcacgtc
ggcgagactacggcgaagctgctggcgcgctcctatggcacctatgccgcctttgagacg
gggatgcgggaggccgagacgcttgccggcgacgcctggaacgatctcaacgccatcgag
ggcatcggcgaggtcgttgcgcgggctatcgtcgaattctacaaggagccgcgcaatgtc
gaggtgatcacccggcttatcgatgaggtgacgcccgaggaggccgagcagccggtgacg
acaggcagcccggtcgccggcaagaccgtggttttcaccggctcgctggaaaagtttacc
cgcgacgaggcgaaggcgagggcggagagcctcggcgccaaggtggcgggatcggtctcc
aagaagaccgacatcgtcgtcgccggcccaggtgctggctccaagctcgacaaggcacgc
gagcttggcgtgcagacgatggacgaggacgaatggctggcactgatcagcgggtga
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