Candidatus Riesia sp. GBBU: AOQ88_02100
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Entry
AOQ88_02100 CDS
T04782
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rig
Candidatus Riesia sp. GBBU
Pathway
rig03030
DNA replication
rig03410
Base excision repair
rig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOQ88_02100
03410 Base excision repair
AOQ88_02100
03420 Nucleotide excision repair
AOQ88_02100
03430 Mismatch repair
AOQ88_02100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rig03032
]
AOQ88_02100
03400 DNA repair and recombination proteins [BR:
rig03400
]
AOQ88_02100
Enzymes [BR:
rig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOQ88_02100
DNA replication proteins [BR:
rig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOQ88_02100
DNA repair and recombination proteins [BR:
rig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOQ88_02100
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOQ88_02100
MMR (mismatch excision repair)
DNA ligase
AOQ88_02100
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOQ88_02100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
ARC55018
LinkDB
All DBs
Position
439552..441585
Genome browser
AA seq
677 aa
AA seq
DB search
MLSKEKKHYINQIRKKLRYHSDLYYNLSDSAISDKEYDDIFLNLKSLEESSSDYYSKFSQ
TQIVGCDPSNKFKKFFHNFPMLSLNSVYNKVDILKFFNKVKNRDKELGKIDFCCELKIDG
VAVNLIYKNGKLYRAVTRGNGLVGEDITRNVYNFCSVPVVLTGSNIPKLIEIRGEIFISK
KKFFQLNTKENLKRKFVSPRNTASGFLRQVNHRKNSNRLLSFFCHGFGIIKGKCLFLNQF
DYLKTCKQWGLPIEDHTVVCKSLKEIMKFYEYIKNINEKLDFDIDGIVVKLNLLSQQKII
GFTSRYPRWAVALKFNTKEKISEVKKINFSVGRTGIITPVAELKPIDFSGVIVRNVSLYN
TNFFKNLDIEVKDKVLVRMSGNIIPKIHSVIRNNKNRNKIKSNIPSECPSCKSRISHRNN
IAICENIFSCPSQIKCSLKHFVSIDAMNIKCIGERIICKLVDSKSVKKISDLYNLNIFSL
VKVNKIGKKTSENIIRSINHSRKTTLQRFLYSLGINGVGKYLSRNLANHYKSLNLIINAN
QNSLKNVPDIGRKVSKSIVDFFSCRENIIVVNALIKEIKISFSDLNFDENSIHLFFNKNI
VITGKLVSFSRNEIIKKLELFRCKVSSNISKKTDFIIVGNNPGKKLMKANNFKIKKIYEE
ELRKIFACSSNYSKSYT
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttaagtaaagagaaaaaacattatataaatcagataagaaaaaaattaaggtatcat
tctgatctatattataatctttctgattctgcaatttcagataaagaatacgatgatata
tttttgaatctgaaaagtttggaagaaagtagctcagattactattcaaagttttcacaa
actcaaatagtaggatgtgatccttcaaataaatttaaaaaattttttcataattttcca
atgctttcattaaatagcgtttataataaagtagatattttaaagttttttaataaagtt
aaaaatagagataaagagttaggaaaaatagatttttgttgtgagcttaaaatagatgga
gtcgctgtaaatttaatatataagaatggaaaattatatagagctgtaacccgtggaaac
ggtttagttggagaagatataacaagaaacgtttataatttttgtagtgttccagttgtt
cttacaggatcaaatataccaaaattaattgaaattagaggtgaaatatttataagtaaa
aaaaaattttttcaattaaatacaaaagaaaatcttaaaaggaaatttgttagtccaaga
aatacagcttctggatttttacgacaagttaatcataggaaaaattctaataggttgctg
tcttttttctgtcatggatttgggataataaaaggaaaatgtctttttttaaatcaattt
gattatttaaaaacatgtaaacaatggggattacctatagaggatcatacagttgtttgt
aaatctttaaaagagataatgaaattttatgaatatataaaaaacatcaatgaaaaatta
gattttgatatagatggaatagttgttaaactaaatcttttatctcaacaaaaaataatt
ggttttacatctagatatcctagatgggctgtcgcattaaagttcaatacaaaagaaaaa
attagtgaagtaaaaaaaataaacttctctgtaggtagaactggaataataacaccagtc
gcagaattaaagccaatagatttttctggagtaatagttagaaatgtttctttatataac
actaatttttttaaaaatctagatatagaagttaaagataaagttttagttagaatgtca
ggcaatataataccgaaaattcatagtgttattagaaataataaaaatagaaataaaata
aaatcaaatattccttcagagtgtccatcttgtaagtctagaattagtcataggaataac
atagctatttgtgaaaatattttttcatgtccatctcaaattaaatgtagtttaaaacat
ttcgtttctatagatgcaatgaacataaagtgtattggagaaagaattatttgtaagttg
gttgattcaaaatctgtgaaaaaaatttctgatttgtacaatttaaatattttttcttta
gttaaagtaaataaaattggtaagaaaacttctgaaaatattattaggtcaataaatcat
tcaagaaaaacaactttgcagagatttttatattctcttggtattaatggagttggaaaa
tatttatctagaaatcttgcaaatcattataagtcactaaatttaataataaacgcaaat
caaaattcattaaaaaacgttcctgatataggaagaaaagtttctaaaagtatagttgat
tttttctcatgtagagaaaatattattgttgttaatgctttaattaaagaaattaaaatt
tcattttctgacttgaattttgatgaaaattcaattcatttattcttcaacaagaatatt
gtaataactggaaaattagttagtttttccagaaatgaaattataaaaaaattagaatta
tttagatgcaaagtaagttcaaatatttcaaaaaaaacagattttattatagtaggaaat
aatccaggtaaaaaattaatgaaggctaataactttaagataaaaaaaatttacgaagag
gaattaagaaaaatttttgcatgttcttcaaattattctaagagttatacttaa
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