Rahnella inusitata: I2123_01675
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Entry
I2123_01675 CDS
T09790
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
riu
Rahnella inusitata
Pathway
riu03030
DNA replication
riu03410
Base excision repair
riu03420
Nucleotide excision repair
riu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I2123_01675 (ligB)
03410 Base excision repair
I2123_01675 (ligB)
03420 Nucleotide excision repair
I2123_01675 (ligB)
03430 Mismatch repair
I2123_01675 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
riu03032
]
I2123_01675 (ligB)
03400 DNA repair and recombination proteins [BR:
riu03400
]
I2123_01675 (ligB)
Enzymes [BR:
riu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I2123_01675 (ligB)
DNA replication proteins [BR:
riu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I2123_01675 (ligB)
DNA repair and recombination proteins [BR:
riu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I2123_01675 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I2123_01675 (ligB)
MMR (mismatch excision repair)
DNA ligase
I2123_01675 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I2123_01675 (ligB)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
SAM_1
RNA_ligase
BssC_TutF
Motif
Other DBs
NCBI-ProteinID:
QUT15563
LinkDB
All DBs
Position
complement(351211..352902)
Genome browser
AA seq
563 aa
AA seq
DB search
MRHLIISLMFLSFYSVASDVSPETCPVWSSARLTQETRQLTTQLAQWDKDYHQSGSSPIE
DAVYDNLRQKQQLWLQCAGQPVPVIAVPGGDDAVYAHPVAHTGLSKLRDKQDVANWMRGR
KNLWVQPKIDGVAVSLVYRHGKLAALLSRGDGQKGQNWTTKAAFIPSIPLKIADIRPELV
LQGELYLKMTGHQQSAEGGVNARSKVAGAMMRTSATELLNQMGVFIWSWPDGPAVMSDHL
QRLSQLGFPVVSEFTLPVSSVDDVAKWRDAWFVQPMPFATDGVVIRQEEEPAGKYWQNKP
ATWAVAWKYPPVRQLTEVSGISTTTGRSGKVTVILNLKALKLDDKWVSKVNVGSVSRFKQ
WDVLVGDQVAITLAGQGIPRLDEVVWRVSERPQMGLPDPQSYGPLSCFTPETGCRAQFLS
RLIWLSGAEGLDMAGFGGATWQKLVDGIPLNSLTDWLTLDEKEMSAVPGIGIKQAQKLMA
QIQLARQKSFRRWLSALGFPSFALTFAQQQQTWRQIQQLTPQDWEMTAGMGKKRTSQVLD
FIHHQEVAAMIDALKQAQLPAFQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgccatttgattatcagtctgatgtttctatcattttattctgttgccagtgacgtc
tcgccagagacatgtcccgtatggtcatcagcgcgcctgactcaggaaacccgccagctc
acaacacagttggcgcagtgggataaggattatcatcagtccggcagcagcccgattgag
gatgcggtttacgataatttgcgccagaaacaacaattgtggctgcagtgtgccggtcaa
cccgtcccggtcatagctgtgccgggcggtgatgatgcggtttatgctcatcctgttgcc
cataccggactgagtaagttgcgtgacaaacaagacgttgcgaactggatgcgcgggcgc
aaaaatctttgggtccaacctaaaatcgacggcgttgccgtctcactggtatatcggcat
ggaaaacttgccgcgttactcagccgcggtgatggtcagaaaggccaaaactggacgacc
aaagcggcttttataccttcaatacctcttaagatcgcagacatccgccccgaactggta
ttgcaaggtgagttgtatctgaagatgaccggtcatcagcaaagtgctgagggtggcgtc
aatgcgagatccaaagtggctggcgcaatgatgcgtacttccgccactgaactgctgaat
caaatgggcgtgttcatctggtcatggccagacggccccgccgtgatgtccgatcacctt
cagcgattgagtcagctcgggttccctgttgtttcagaatttactcttccggtaagctcg
gtggatgacgtcgcgaaatggcgcgatgcctggtttgttcagccaatgccttttgcaact
gacggtgtggttatccgtcaggaggaagagcccgcagggaaatactggcagaacaaacct
gctacctgggctgtggcatggaaatatccacccgtgcggcaactcacggaagtttcagga
atttccacgacgacggggcgcagtggcaaggtaacggtcattcttaatctgaaagcgcta
aagcttgatgataaatgggtgagcaaagtgaatgtcggttccgtttcccgttttaaacaa
tgggatgtgcttgttggagatcaggtggccattacgctggccggtcaggggatccccagg
ctggatgaagtggtatggcgggtaagcgagcggccacaaatgggattaccagaccctcag
tcatacggcccactttcttgttttaccccggaaacaggctgcagagcgcagtttctctca
cggttaatctggctgagcggcgctgaaggacttgatatggcgggctttggtggagcgaca
tggcaaaagctggtggatggcattccgctcaactctttaacggactggctcacgttggat
gaaaaagaaatgtcggcagttccggggataggtattaaacaagcgcagaaactaatggcg
caaattcagttggctcggcagaaaagctttcgacgctggttgtctgcattaggtttcccg
tcgtttgccctgacatttgcgcagcaacagcaaacgtggcgtcagatccaacagctgaca
ccgcaagactgggagatgacggcaggtatgggtaaaaaacgcacctctcaggtattggat
tttatccatcatcaagaggttgccgctatgatcgatgcgttaaaacaggcgcaattaccc
gcctttcagtga
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