Rhinichthys klamathensis goyatoka (western speckled dace): 130071740
Help
Entry
130071740 CDS
T09701
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04622
RIG-I-like receptor signaling pathway
rkg04623
Cytosolic DNA-sensing pathway
rkg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130071740 (rigi)
04623 Cytosolic DNA-sensing pathway
130071740 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130071740 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rkg04054
]
130071740 (rigi)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130071740 (rigi)
Pattern recognition receptors [BR:
rkg04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
130071740 (rigi)
BRITE hierarchy
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
DEAD
Helicase_C
SNF2-rel_dom
PhoH
AAA_22
IstB_IS21
AAA_19
Motif
Other DBs
NCBI-GeneID:
130071740
NCBI-ProteinID:
XP_056092574
LinkDB
All DBs
Position
Unknown
AA seq
940 aa
AA seq
DB search
MYELEKENLRRLSDYIAKILRPSLIKTFMTTHFDKEMVERILSAEETSVTTAAQMLLDQM
CYLEEEGWFQAFLDTLFASEYTGLYKAIKEWDFGQLEELNEYRKLLERIEPSITKLIKPS
ELLTHMNDCLKPRECEEIKAVEIQKGRIAASERLVDTLLRSDKPNWFKVLKMALDACSCD
QALELLESNGGGTASMGCVSDEEADSMTTETVTTVSFEFREEAESEDMLMNANNMTVTET
PSGFKGEYVRSGERKLREYQKELTDAAEGQNTIICAPTGCGKTIVAVAICEHHLKKCPGQ
AKIVFLATKVDVYEQQYKLFKEHFSITDPNIRVTGMCGDMELSVRLLIESHDIVVMTAQI
LVNALQSGEVPSLDLLSLILLDECHNTTGKHPYNNIMTRYLDTKLSSSTHSLPQIVGLTA
SVGIGSFKDRTEAENNILQLCANLDTRVIATVTKHLDELRTYVHTPDKDFFEVPQRMCDP
FIRIIRNIMSNIEQLAQNTYNIESLSNIQNREYGSQKYEQWIVSVQKSCRVIAMKNSDEE
RRICRDLCNYTEHLRKYNDALIINEDARTKDSLDFLDGFFEQVRNAGFDETERKLTALYD
SQRPQLLVLATEGQQNPKLEELRFILEEEYHNNDQTRTVLFVRTRALADAMKKWIDDTDS
LKFLMPGVLIGKGRKSNFPGSVMTPTNKKGVLDSFKSSDQSKILIATSVADEGIDIPQCN
LVLMYEYVGNVVKMVQVRGRGRAQGSRCFLISSNKDRIMKEKINMFKEKIVEEAIVELQS
LHDLSYKVDRLQREDKARRDHVSASPEKPKNQGSYRLLCGKCKKFACLSDDLRVVQESHH
IALDRSMFERFTTFPHKKPKTFCGFSKNKKMLCGDCKHDWGLIASYLTIQDLPLLKIESF
VVQDRVTQEQFYFRKWREVTFAIREFDMKEITPQTWPLRD
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggaaaaggagaatttgcggcgcttgagcgattatatcgcgaagatttta
cgaccgtcacttatcaaaaccttcatgacgacgcactttgataaagagatggtggaaagg
attctctcagccgaggagacgtctgtgaccaccgctgcccagatgttgctggaccagatg
tgttatctagaggaagagggctggtttcaggcctttctggacaccctgttcgcctcagaa
tataccggtctgtacaaggccattaaggagtgggacttcggccagttagaggaactgaat
gagtaccggaagcttctggagagaatcgaaccatcgatcaccaagctcataaagcccagc
gagctgctcacgcacatgaacgactgtctcaagcccagagagtgtgaagagatcaaagcg
gtggaaatccagaaaggtcgtatcgctgccagtgagagactcgtggacactctcctgcgc
tcggacaaaccgaactggtttaaggtgctgaagatggcgctggacgcctgcagctgcgat
caggcactggagctgctggagtccaatggaggcggtacagcctcaatgggctgcgtatct
gatgaggaggcagattccatgacgacagaaaccgtgacgacagtgagttttgagttcaga
gaggaggctgagagtgaagacatgctgatgaacgccaacaacatgactgtcacagagaca
cccagcgggttcaaaggggaatacgtgcgttcaggcgagcgtaagctgagggagtatcag
aaggagctgacggacgctgctgaggggcaaaacaccatcatctgcgcccctacaggatgt
ggaaaaacgattgtggccgtggccatctgtgaacaccacctgaaaaagtgtcccggacag
gcaaagatcgtgttcttggcaaccaaggtcgacgtctatgaacaacagtacaagcttttc
aaggaacacttttctattactgatcccaacatcagggtgacaggtatgtgcggtgatatg
gagctgtcggtgcggctgctgatagagagtcatgatatcgtggttatgacggcccagatc
ctggtgaacgcgcttcagagcggagaagtgccgtcactggacctgctgtcactcatcctg
ctggacgagtgtcacaacaccaccgggaaacacccgtacaacaacatcatgacccgctac
ctggacaccaaactcagctccagcacacactctctccctcagatcgtgggcctgacggcg
tcggttggcatcggttcgttcaaggacagaacggaggcagagaacaatatcttacagctc
tgtgccaacctggacaccagggtcatcgccacggttaccaaacacctggatgagctcagg
acgtacgtgcacacacctgataaagacttttttgaggttcctcagcgcatgtgtgatccg
ttcatcagaatcatcaggaacatcatgagtaacatcgagcagctggcgcagaacacctac
aacatcgagagcctgtcgaacatccagaaccgcgagtacggctctcagaaatacgagcag
tggatcgtctcggttcagaagagctgcagagtcatagccatgaagaactcagacgaggag
agacgaatctgcagagatctctgcaactacactgaacacctgcggaaatataacgatgct
ctgatcattaatgaagacgctcggactaaagattccctcgatttcctggacgggtttttt
gagcaggtccggaacgccggcttcgacgagaccgagaggaaactcaccgcgctctacgac
agtcagcgcccgcagttgctggttttggccactgaggggcagcagaaccccaaactagag
gagctgaggttcatcctggaggaagaatatcacaacaacgatcagacgcgcaccgtcctg
ttcgtcaggacccgagccctcgccgacgccatgaagaaatggattgatgacacagattcc
ctgaagttcctgatgcctggagtcctgataggaaaaggacgaaaatccaactttcccggc
tcagtgatgactccgaccaataagaagggtgttttggactcgttcaagagctcagatcag
agtaagatactcatcgccacgtcagtcgctgatgaaggcatcgatatcccacaatgcaac
ctggttctgatgtacgagtacgtgggtaacgtggtgaagatggtgcaagttcgaggtcgc
ggtcgtgcgcagggcagtcggtgtttcctgatctccagtaataaggatcgcattatgaag
gagaaaataaacatgtttaaggagaaaatcgtggaggaggcgatcgtggaactgcagagc
ctccatgatctcagttacaaggtggacaggttgcagagagaagataaggcccggagggat
cacgtcagcgccagtcccgaaaaacccaaaaatcaaggcagttaccggctcctctgcggg
aagtgcaagaagtttgcatgcttgagtgacgacctcagagtcgtgcaggagtctcatcac
atcgctctggatcgctccatgttcgagcgctttacaacttttcctcataagaaaccaaaa
accttctgtggctttagcaagaacaagaagatgctctgtggcgactgcaaacacgactgg
ggcctcatcgcctcttacctcaccatccaggacctgccgctgttgaagatcgagagtttc
gtggtgcaggatcgtgtcactcaagagcagttttacttcaggaaatggcgtgaagtgacg
tttgccatccgagagttcgacatgaaggagatcacgcctcaaacatggccgctgagagac
tga
DBGET
integrated database retrieval system
