Rhinichthys klamathensis goyatoka (western speckled dace): 130071834
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Entry
130071834 CDS
T09701
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04115
p53 signaling pathway
rkg04145
Phagocytosis
rkg04148
Efferocytosis
rkg04350
TGF-beta signaling pathway
rkg04510
Focal adhesion
rkg04512
ECM-receptor interaction
rkg04518
Integrin signaling
rkg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130071834
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130071834
04518 Integrin signaling
130071834
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
130071834
04148 Efferocytosis
130071834
09143 Cell growth and death
04115 p53 signaling pathway
130071834
09144 Cellular community - eukaryotes
04510 Focal adhesion
130071834
09142 Cell motility
04820 Cytoskeleton in muscle cells
130071834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130071834
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130071834
Membrane trafficking [BR:
rkg04131
]
Endocytosis
Phagocytosis
Opsonins
130071834
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130071834
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
EGF_3
TSP1_CFP_C
cEGF
TSP1_ADAMTS
Laminin_G_3
TSP1_CCN
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
130071834
NCBI-ProteinID:
XP_056092704
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MTLRGLVLCLLLWSSESRHAEMPDDDSVFDLFELSNLHKKHHGVSLVKGPDPNSPAYKIL
NPNLIPSVPELSFRDLIYSIQSERGFIFTANLKQAKRTRGSLVSVERTDGTGSVFEIISN
GKADTVDLVYRTASGQHVVSIEDVSVANGHWRNITVFVQEDRAQVYVGCEEINTQELDVP
IQQILSQESADIASLRIAKGAAKSDRFMGVLQNVRFVFGTTLDAILRNRGCGSSTFITDV
MSFENSVNGSSAAIRTDYTGHKSKDLQDICGFSCDDLTSMFTELKGLGVVVKQLSNELRQ
VTADNNLIMNQIQIHKGVCLHNGIVYGDKSEWTVDSCTHCTCQNSATVCREISCPLMPCA
NATVPDGECCPRCGTPSDAGAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCDGTS
VQTRDCYTQECDKRFKQNGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGKDCEGD
GRQTEPCQKPSCPVNGGWGPWSPWDSCSVTCGGGLQRRHRLCNSPAPKHGGKECLGDSKG
SRLCNSQSCPVDGCLSNPCFASAKCTSFPDGSWKCGECPVGYTGDGVHCQDIDECKEVPD
ACFVLNGVHQCENTEPGYNCLPCPPRYSGQQPFGRGTEQAIANKQVCTPRNPCEDSSHDC
NKNANCIYLGIFSDIMYRCECKPGYAGNGYICGEDPDLDGWPNTDLLCVENATYHCKKDN
CPDLPNSGQEDYDKDGTGDACDSDDDNDGIPDDGDNCPFIFNPRQYDQDQDQVGDRCDNC
PYDSNPEQTDTDNNGEGDACAIDIDGDGILNEKDNCPYVYNTDQRDTDRDGVGDHCDNCP
LEHNPDQIDSDSDNVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHD
DDNDGVPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIFDVCPENFAISETDF
RRFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINTD
RDDDYVGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLR
NALWHTGDTEGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGHIRVIMYEGKRVMADSGS
IHDMTYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgactctgagaggactcgttctgtgtctcttattgtggagttccgagagcagacatgca
gaaatgccggacgatgattccgtgttcgacctgttcgagctctctaatctgcataagaag
catcacggggtgagtttagtgaagggacccgatccaaacagtcccgcgtacaagatcctg
aacccaaacctgatcccctccgtgcccgagctctccttccgggacctgatctactccatc
cagagcgagagaggcttcatcttcaccgcgaacctcaagcaagccaagcgcacacgggga
agcctggtctccgtggagaggaccgacggaaccgggtccgtgtttgagatcatatccaac
gggaaagccgacacggtggatctggtgtaccggaccgcgagcggacagcatgtggtttcc
atcgaggacgtgagtgttgcgaacgggcactggaggaacatcacggtgttcgtgcaggag
gaccgggctcaggtttatgtgggttgcgaggaaatcaacacgcaagaactcgatgttccg
atccagcagattctgagccaggagagcgcggacatcgccagcctgaggatcgcgaaaggc
gccgccaaatcagaccgcttcatgggagttctccagaatgtgcggtttgttttcggaacg
acgctggacgcgattttacgcaatagaggatgcgggagctctaccttcatcacagatgtc
atgagctttgagaactcggtgaacggatcgagcgcggccatccgcaccgactacacggga
cacaagtctaaagacctgcaggacatctgcggcttctcctgcgacgatctgaccagcatg
ttcacggagctcaagggactcggtgtggtggtgaagcagttgtcgaacgagctccgccaa
gtgacagcagacaacaacttaataatgaaccagattcaaatccacaaaggcgtttgtctg
cacaacggcattgtgtacggagacaaaagcgagtggacggtggacagctgcacacactgc
acatgtcagaactcggccactgtgtgtcgtgaaatctcctgcccgctcatgccctgcgcc
aacgccacggtcccggatggcgaatgttgcccgcgctgtggaacaccgagtgatgcgggt
gcagaagatggctggtcgccctggtccgaatggacccattgttcggtgacctgtggaaga
ggcattcagcagcgtggacgctcttgtgaccgaatcaacagcaactgtgatggcacgtcc
gtccagacgagagactgttacacgcaagaatgcgacaaacgattcaagcagaatgggggc
tggagccactggtctccctggtcttcttgctccgtgacgtgtggcgagggtgtcatcact
cgcatccggctgtgcaactccccaacgcctcagatggggggcaaagactgcgagggagat
ggtcgccagaccgaaccatgccagaagccgtcgtgcccagtgaatggaggttggggaccc
tggtctccatgggactcttgctccgtcacgtgtggtggaggacttcagcgcagacaccgt
ttgtgcaacagccccgctcccaaacacggtggaaaagaatgcctgggtgactccaaagga
agccggttgtgcaactctcagtcgtgtcctgttgatggatgtctctccaacccgtgcttc
gccagcgccaaatgcactagcttccccgacggctcctggaagtgcggcgagtgtccggtg
ggatacactggggatggagtccactgtcaagacatcgatgagtgcaaagaagttcccgat
gcctgttttgtgctcaatggagtccatcagtgtgagaacacagaaccgggctacaactgc
ctgccctgcccaccacgctactccggacaacagcccttcggccggggaacagagcaagcc
attgccaataaacaggtctgcacacctagaaacccatgtgaggacagcagccatgactgt
aataagaatgccaactgcatctacctgggaatcttctccgacatcatgtaccgctgcgaa
tgtaaaccaggctatgctgggaacggttacatctgcggagaagacccagacctggacggc
tggccaaacacggacctcctctgtgtggaaaacgccacctaccactgcaagaaggacaac
tgtcctgaccttcccaactctgggcaagaagactatgacaaagatggaactggagatgct
tgtgacagtgatgatgacaatgatgggatccctgatgacggggacaattgcccgttcatc
ttcaacccaagacagtacgaccaggaccaagatcaagttggcgaccgatgcgataactgc
ccgtacgacagtaatccagaacagaccgacaccgacaacaatggcgagggtgatgcgtgt
gccatagacatcgacggagatggcattctgaacgagaaggacaactgtccatatgtgtac
aacactgaccagagagacaccgaccgggatggagtcggtgaccactgtgacaactgcccg
ctggagcacaaccctgaccagattgactcggactctgacaacgttggagacaagtgtgac
agcaaccaagacatcgatgaggatggacatcagaacaaccttgacaactgcccctacatc
cccaacgccaaccaggccgaccacgacaaggacggcaaaggagacgcctgcgatcatgac
gatgacaatgacggcgtccctgacgacaaagacaactgcagactcgccttcaacccagat
cagctggattcggacggcgatggccgaggtgacgtttgcaaggacgactttgaccaagat
aacgtgccagatatttttgatgtttgcccggagaactttgccatcagtgaaacagatttc
cgcagattccagatggttccccttgatcccactggaacttcccaaattgaccccaactgg
gtcgtccgtcaccagggcaaagagctcctgcagaccgtcaactgtgatcccggcattgct
gtcggttatgatgagttcaacgccgtggacttcagcggcacgttcttcatcaacacggac
cgtgacgacgactatgtcggctttgtgtttggctaccaatccagctcgcgtttctatgtg
gtgatgtggaagcagatcactcagacctactggtctcatacgcccaccaaagcccagggt
tactctggactgtctattaaagttgtgaactccactacgggaccgggcgaacatctcagg
aacgctttgtggcacactggagacaccgaaggacaagtgcgcaccctttggcacgacccc
aagaacattggctggaaggattacactgcctacagatggcacctgatccacagacccaaa
accggacacatcagagttattatgtatgagggcaagagagtcatggctgattcaggaagc
attcatgacatgacatacgctggaggaagacttggcctcttcgtcttctctcaagagatg
gtttacttctcagacctcaaatacgaatgcagagatgtataa
DBGET
integrated database retrieval system
