Rhinichthys klamathensis goyatoka (western speckled dace): 130072728
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Entry
130072728 CDS
T09701
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein isoform X1
KO
K25100
Msx2-interacting protein
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
130072728 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rkg03036
]
130072728 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
130072728 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_PARP14_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
130072728
NCBI-ProteinID:
XP_056093928
LinkDB
All DBs
Position
Unknown
AA seq
3144 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLEDAAPASAHGREVAGFSRSAVGPVYGPPV
TLHTREGRYERRLDGSGSDGRERAYEHSPYGHHERSGSFDRPRHYNTDYYRDRTMFAGSS
PAASALSGGFEATESHFEPRIRDPFTLSGSARRDPYRDDRGRRADRTYHHHRRSRSSQSS
QSRQPSPQRSAGHTPKAAHSPKRAAASPGPRSRSRSPSSSSDSASSTSSTGSGSSDSNSS
SSEGSRARSVQSTATHAPPAPALPMDSDEPRRSFGIRVQNLPTRSTDTSLKDGLFHEFKK
YGKVTSVQIHGALEERYGLVFFRQQEDQEKALSVSKGKLFFGMLIEVTAWNGPETESENE
FRPLDGRIDEFHPKATRTLFIGNLEKTTNYQQLLDVFQRFGEIVDIDIKRVNGIPQYAFV
QYSDIASVCKAIKKMDGEYLGTNRLKLGFGKSMPTACVWLDGLTSNITEQYLTRHFCRYG
PVVKVVFDRLKGMALVLYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQMAFYRSMQA
SGQDIRDFYDIPAERREERRTPYHEFSAERAYYENVRTPGIYAEDPRREYPGRSRDRYAE
LDHYQGEHYDPRYHEDPREYRDYRDPFEDIRKYSYIQRERERERERFEADRGRWSPSHQR
RPLTPSASPSPSERVSREAERRVYRHSSERSGSCSSLSPPPAQFEKSEKSPVDYKPEGLE
REIEPTEAERTSGAENKKRGRRKEKADREKGEKAKQRRGKVQSPSAPHSEADREPSLDLG
SGKGKVSDVESQERQKHKGDKEPSPVDHVTRLEPQKGERLDQGKSESLDRDGKGKSKKHL
KSDSGSDGKDSLLDSDRLAARKRRFGDPSGKTIRQKRGRLEDDSGSGISQPADFATNTGF
AKETDIDVKAEKEAQKREHPKSRTGPHYSQREELDGTMRVTSQGPSLRPGELSEVDVLDS
KSHPVPRRFSIDGTSDKDSKVRDEYLENIDLSQSYRKQMEQNRRLRQQLQTPDKQGKADS
QQGIDAEDLEHRSLVHEVGKPPQDVTDTSPPNKIKKQESFEMEMSAKRERIYRTGRQKSE
DPEWNNTSSPRFQHAPLLREVEYADPPTQMTVREVKEPSKPEDNVPLDLELAGKRMHTVQ
MSKMSTSLPDEQQRRWESRLKQELLPDFSRGPEKRRLNRKYLDYGLWPDLEPGEVRSDSE
EDRENKSNSPAPSTSVSFSERHRPDRLSESKLTSALERNKFRSFADDQTITPDTKALLER
AKSLSSSREDNWSFLDYDTHFASLRSRKDTEKVESAPRPTPSWYMKKKKIRSESDDKVEE
RKEDPKPEEQERRELFASRFLHSSIFEQDSRRLQHLERKHEDPEHGVGYLYPQQGPAEGQ
PDPEPVVLFHSRFLELTRLQQQKNKEQIPQNSKHEETVDTTRGSKTPEEEQAPQQQIATE
PSIHPAESKTISPVQAPQTSPVQAPQISPPVIIAIESLPSVETECVDTPAYNLFDPSMKE
EDKEHEQPSAQPLQPLLEQPSEPNCSECQESKIPVEEMVLKTNDFECAPETKKVVSEQLS
SNETPPSISQPETESPVKFPESPSPLSQISSEPHEKEPEPPVTEAESINTGDQKVADNYP
VEEAVSPPPKSRNKKTKTSPSTPVTTTLPATPDKQSTRKSERIDKEKLKRSSSPRGEASK
AVPDSKSLSKSPVHSIEMEQGAEQNSQPVRARRRNVRSVYATPIEDETALQPGKDAESPR
VRKRVDRDVGSDVETVVAPPPTSRRGRPPKNRRQADDVPAGKSERSKSTESKELDASETS
SEGVPKVGKGKCSPHTQKGVSPVNVSASGIGKKGDKMEKISESSKVITEENSLVLKNLTI
RLDVTEVKAMLQTSEDEPGTEDSPKKSSPGVSSKDEVIESKFESDAMDEVNSEGEALPAA
IKAIDSDVSLLSRELELEQAVENIAKLTEDASPPPPPQFKSNLTKAQRSLPEEPERDSEE
EKPAIPSSETELAAAIDSITAEETSSTLPQEQIINSVADSNADVQTLAPSSKVSETCVGT
ADVQEETVTSPRKGFKGRAKASKKGKGQKGAGSKKEPFKDVVLDAENIPVKSLESIPAEL
TTVKERSPTSTAVVITSSSKQVVTLTAPNADVPNEPELPLKAEMDIPKSSPAPSRSPTSP
YSYKNTSPSLSPTRTCLKNLSSYPSRLSVSPTERFNPPKEAGVLSPPQTPLESPTLPSDT
NVHDSNSSDLRKILTKPRTGPVLDIAATSGNLHPHSARESDITPDVVTSKSAHQDNRQPS
VSAQPVVRQPASIPSPETKQIFSEKSVISVIASTPTSVISRVCNPPDSEEKSNAPIGNPF
LDKQPPKQIYQPSLEESSTYHGPPVGEEGGNAGRYIVESTSLSTGSSTGLRVQTSEGVVV
LSHSGQKMEGPHRISAKISQIPPASAVDIESQQLVSMPQIKQEPYSASQTPSSKCPLPSD
HGHSIKPQLNVSAIKQESALDKLESSYAPVQSGVVKLLQQTPGTSVMSYHHTIMKHPKKV
DESLSVDGVKPAWVPTISPAKSPHLPPAAGNHVGFIAGTQTDRTPSLIQPKQEPRSPRKS
GHPHSPFAKVSSPIGSSSPKGVSMVLSSGLPSLSPYVSTVHHSEQSVIMPPHNAHSNIGR
MSPHRVGPIGHLTPGEVRVNTPPLSMMNYAIHSESLTSSWPPGQQRPISPQAVGNREMVL
KVNTANARSHDGEEEARRFHTALGRPAAQLKPESIPAEYRGALPSGLPIDRFNMSPRDMR
VLIHHQQSDRPTAELHQVPENMPRSSTPTSMAASLSPRPHLLAKGVSEKDPSKTSELRRA
QTPPSKEGMMAIRSAMPPMASPQRVQLMTPGAGTSFPEYSNMYTNLRPTHAQYADNSPMG
INQSTHSIPPSQGVQEPESSQPQSEAKAELVGHQPVNMVQLLTKYPIVWQGLLALKNDTA
AVQLHFLCGNKALGLRSLPLPESGGILRIVQRMRLEAQQLEGVARRMTGESDFCLLLAMP
CGVNQDDVLNQTQALKSAFINYLQAKLAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLS
RLAPDLLSQISSISPHLMIVITSV
NT seq
9435 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctctgggtgggaaatttacccgaacatgttcgtgaggag
aagattgtggagcattttaaacggtatggccgggtggagagcgtcaaagtcctgcgcaag
cgcggctccgagggcggcgtggcggcctttgtggatttcgtcgacatcaaaagtgctcag
aaggcgcacaacgccgttaacaaaatgggggacagggaccttcgcaccgattacaatgag
ccgggttcggtgcccagcgccgtgcgcggtctggaggacgccgcgcccgctagcgctcac
ggaagggaggttgcagggttctcgaggagcgccgtggggccggtgtacgggcctccggtg
actctccacaccagagaggggcgctatgaacgcagactagacggcagcggttctgacgga
cgggagcgggcgtacgagcacagtccgtacggacaccacgagcgcagcggctccttcgac
cggccgcgccactacaacacggactattacagggaccgcaccatgttcgctggctccagc
ccggctgctagcgctcttagcggaggcttcgaggccaccgagtctcactttgagcctcgg
atccgtgaccccttcaccctgtctggttccgctcgccgcgacccgtaccgtgacgacagg
ggccggcgcgcggaccggacgtaccatcaccatcggcggagccggtcgtcgcagtcgtcg
cagtcgcggcagccgtcgccgcagaggagcgcgggacacacgcctaaagccgcgcactcg
cccaagcgagcggcggcgtctccgggtccgcggtctcgctcgcgcagcccgtcctccagc
tccgactccgctagcagcaccagcagcaccggcagcggcagcagtgactcgaacagcagc
tccagtgaaggctcgcgagcgcgctcagtgcagtccacggccactcacgctccccccgcg
ccggcgctccccatggactccgacgagccgcgcaggagcttcggcatccgcgtccagaac
ctgcccacgcgctccacagatacgagtctgaaggacgggctgttccacgagttcaagaag
tacgggaaggtgacgtcggtgcagatccacggcgcgctggaggagcgctacggcctggtg
ttcttccggcagcaggaggaccaggagaaggccctcagcgtgtccaagggcaagctgttc
ttcgggatgctgatcgaggtcacggcctggaacggccccgagaccgagagcgagaacgag
ttccggcccctggacggccgcatcgacgagttccaccccaaggccacgcgcacgctgttc
atcgggaacctggagaagaccaccaactaccagcagctgctcgacgtcttccagcgcttc
ggggagatcgtggatattgatatcaagagggtgaatggcattccccagtatgcatttgtt
caatactccgatattgcaagtgtttgtaaagccattaagaagatggatggagagtatctc
ggcaccaacagactcaagcttggctttgggaagagtatgcccacagcgtgtgtgtggctg
gatggcctgacctccaacatcacagagcagtatctcacgcgccacttctgtcgctacggg
cccgtcgtcaaggttgtgtttgataggttaaaaggaatggctcttgttctgtacaacaac
actgatttcgcccaagcagctgttagagaaaccaaaggatggaagataggagggaacaaa
attaaggttgattttgccagtcaggagagtcaaatggctttctatcgatctatgcaggcg
tcagggcaggacatccgtgacttttatgatattccagcagagaggagggaagagcggcga
actccttatcatgagttttcagctgagcgggcgtattacgaaaatgtaaggactcctggc
atttacgccgaagacccccgtcgggaatatcctggtcgcagtcgcgatcgctatgcagag
ttagatcattaccaaggagaacactacgatccccgctaccacgaggacccacgggaatac
agagattatcgagacccttttgaggacatcaggaagtacagctatatccagcgggaacgt
gaacgggagcgtgagcgatttgaggccgaccgcggcagatggagcccgtctcatcagcgg
cgtcccttaactccctctgcctcaccctctccgtctgaacgtgtttctcgagaagcggaa
cgacgggtgtatagacactcctctgagagatctggaagctgcagctcgctgtctccacct
ccagctcagtttgagaagtctgagaaatcaccagtggattacaaaccggaaggactggag
agagaaatagagccgaccgaggcagagcgcacaagtggagcggagaacaagaaacgtggc
agacgcaaagaaaaggctgacagagagaagggagaaaaagcaaagcaaaggagagggaaa
gtacagtctcccagtgcacctcattctgaagcggatagagagcctagtctggatttgggt
tctgggaaaggaaaagtttcagatgtggagagtcaagaaagacaaaagcataaaggggac
aaagaaccctccccagttgaccacgtaactcgccttgagcctcaaaagggagagcgactc
gatcagggtaaaagtgagtcattagaccgggatggcaaaggaaagtcaaagaagcattta
aagtctgactctggtagtgatggcaaagattcccttttagattctgacagacttgcagcg
agaaagaggcgttttggcgatcccagtgggaaaactataaggcagaaaaggggccgtctt
gaagatgattcaggttctggaattagccaacctgctgactttgctacaaacaccggattt
gcaaaagagactgatattgacgtgaaagcagagaaagaggctcaaaaaagagaacacccc
aaatccaggactggccctcattatagtcaaagggaagagctggatggcactatgagagtg
acgtctcagggtccatcgctacgaccaggggaattatctgaggtggatgttctggactca
aaatcgcatcctgtgcctagacgattttcaatcgacggaacctccgataaggacagcaaa
gtaagggacgaatatctagaaaatattgacctttctcagagttaccgcaaacagatggag
caaaacagacggcttcggcagcagctgcagacccctgataaacaaggaaaggcagattct
cagcaaggtatagatgcagaagatcttgagcatcgcagcctggtgcatgaggttggcaag
cctccgcaagatgtaaccgatacctcgcctccaaataagatcaagaaacaagagtccttt
gagatggaaatgagcgctaagcgagaaaggatttaccgaacaggtcgccaaaagagtgaa
gaccctgagtggaataacacaagttctccgaggtttcagcatgcaccgctactaagagag
gtagaatatgctgaccctcctactcaaatgactgtgagagaagtaaaagaaccatcaaaa
cctgaagataatgttccattagatctggagcttgctggtaaacggatgcacaccgtacag
atgtcaaagatgagtacatctctaccagatgagcagcaaagacgttgggagagtcgacta
aagcaagagttgttgccagacttttcaaggggccctgaaaaaagacgtctcaatcggaag
tacctggattatggactttggcccgatttggagcctggtgaagtgcgttctgactctgaa
gaggatcgtgaaaataaatccaactctcctgcaccatcaacttctgtatccttctctgaa
agacatcgtccagacaggttgtcagagtccaagctaacatctgccctagagagaaacaaa
ttccgttcttttgcagatgatcagacaatcacaccggatactaaagctttgttagagcgt
gcaaagtctttgtcctcctcaagagaagacaactggtctttccttgattatgatacacat
tttgccagtttaaggagtagaaaggacacagaaaaggtagagtcagccccacgaccaact
ccctcatggtacatgaagaagaaaaaaattcgaagcgagtctgacgacaaagtggaagaa
aggaaagaagatccaaagccagaagaacaggagagacgagagttgtttgcgtcacgtttt
ttgcacagttctatttttgagcaggattcaaggcgtctccagcatctggaacgaaagcat
gaggaccctgaacatggtgttggatatctgtaccctcagcaaggcccagcagaagggcag
cctgacccagaaccagttgtgcttttccatagccgctttttggagctaacaaggttgcag
caacagaagaataaagaacaaatccctcaaaattccaagcatgaagaaactgtagataca
accagaggaagtaaaacaccagaggaagaacaagctccacagcaacaaatcgctactgaa
cctagtatccatccagctgagagtaaaacaattagccctgttcaggctcctcagactagt
cctgtccaagctcctcaaatatcaccacctgttataatagccatagaatccttgccatca
gtggaaacagaatgtgttgatactcctgcctataatttgtttgatccttccatgaaggag
gaagataaagagcatgaacagccctcagctcagccattacagcctttgctagagcaaccc
tcagaacctaattgttcagaatgccaagagtcaaagatcccagtcgaggagatggtattg
aagactaatgactttgaatgtgctcctgaaaccaaaaaagtggtttcagaacagctttca
agcaacgaaacaccacccagcatttcacaaccagagactgagtctccagtgaagtttcca
gaatcaccaagtcccctctcacaaatctcttctgagccacatgaaaaggaacctgagcca
cctgttacagaagcggaatctatcaatacaggtgatcagaaagttgctgataattatcca
gttgaggaagctgtgtctccccctccaaagtcaagaaataaaaagactaaaacctcacct
agcacaccagtaactacaactctgcctgctaccccggacaaacagagcacccgcaaaagt
gagcgcattgacaaagaaaaactgaaacgctcatcttctccaagaggagaggcatccaag
gcagtgcccgattcaaagtcattaagtaagtcccctgtgcacagcatagaaatggagcaa
ggtgcagagcaaaattcacagccagttagggcaaggcgtaggaatgtgcgttctgtttat
gctacaccaattgaagatgaaactgctctgcaacctggcaaagacgctgaatcacctcgt
gtaaggaagcgtgtagacagagatgtgggttctgatgtagagactgttgttgcaccgcca
ccgacctcaagacgggggcgcccccccaagaatcgacgccaagctgatgatgtaccagca
ggaaaatctgaacggtcaaaatcaactgagtctaaggagttggatgccagtgagacgagc
agtgagggggttcctaaagtaggtaaaggcaaatgttcacctcacacgcaaaaaggagta
agtccagtgaatgtatcagcatctggaattggaaaaaagggagacaaaatggagaaaata
tcagaaagctccaaagtcatcactgaagaaaactctcttgttcttaaaaaccttacaatt
cggcttgatgtgaccgaggtgaaggcaatgcttcagactagtgaagatgaacctggaact
gaggattctcccaaaaagagctcacctggagtgtcttcaaaagatgaggtaatagaatct
aaatttgaaagtgatgcaatggatgaagttaatagtgaaggggaggcattgcctgctgca
ataaaagccattgactcagatgtatctttgctgtctcgagagctggaacttgagcaagct
gttgagaatattgcaaagctgacagaagatgcatctcctcctcctcctcctcagtttaaa
agtaacttgacaaaggcacaacgttcattacctgaagaaccagagcgtgactccgaagaa
gaaaagcctgcgattccatctagtgaaacagagcttgctgctgctatagattccattaca
gcagaggaaacatctagtaccctgccacaagaacaaatcattaactctgttgccgattca
aatgctgatgtacagacacttgcacctagttcaaaagtatctgaaacttgtgttggtaca
gcagatgttcaggaggagactgtaacctctcctagaaaagggtttaaaggcagagcaaaa
gcttcaaagaagggcaaaggccaaaagggtgctggaagcaaaaaagaaccattcaaggat
gtagttttggatgctgaaaacatccctgttaagtcactggagtccatacctgcagaactt
acaactgtcaaagaaagatcacccacaagtacagctgtagtcattacttcctcttctaag
caagttgtaactttaacagcgcctaatgcagacgttccaaacgaaccagagttgcctctt
aaagctgagatggatatcccaaaatcttcacctgctcccagcagaagcccaacgtcacct
tactcatacaaaaacacgtccccctcactctctccaacaagaacctgcctcaagaatttg
tcctcatacccaagcaggctttctgtttcccctacagagcgtttcaatccgccgaaagaa
gctggggtcctctcccctccacagacccctttagagagcccaacattaccctcagacacc
aatgttcatgactccaactcgagtgatttgcgtaaaatcctcacaaagcctagaactggc
ccagtgttggacattgccgctacatctgggaatctgcatcctcattctgcaagggaaagt
gacattacaccagatgtggtaaccagcaaaagtgctcatcaagataacaggcaaccctct
gtttcagcccaacctgtagttcgacagcctgcctctattccatccccagaaacaaagcag
atctttagtgagaagtcggttatttcagttattgcttccactcctacctctgtcatcagt
cgagtttgcaatccccctgactctgaggagaagtcaaatgctcccattggaaatcccttt
ctcgacaaacaacctccaaaacagatttaccagccaagcttggaggaaagcagtacgtac
catggtccaccagtcggtgaggaaggtggaaatgctggtcgttatattgtggagagtaca
tcgctgagcacaggttccagcacagggctgagagttcagacgtcagaaggtgtggtggtg
ctgagtcattctggccagaaaatggaggggccacatcgcataagtgccaaaatcagccag
atcccaccagccagtgctgtggacatagagtcccagcagctggtgtccatgccccagatc
aagcaggaaccctacagtgcctcccaaacaccatcttcgaaatgcccactcccttcagat
catgggcattcaataaaaccacaactaaatgtctccgcaattaaacaagagtctgcactg
gacaaattagagtcctcttacgccccagttcaaagtggagttgttaaattattgcaacaa
acgcctggcacatcggtcatgagttaccatcatacaattatgaagcaccccaaaaaggta
gatgagtccctcagtgtggatggcgtgaaacccgcctgggtcccaactattagtcctgct
aaaagtcctcatcttcccccagcagcaggcaatcatgtcgggttcatagctggcacacag
acagatcgaactccctcgcttattcaacctaagcaggagccgcgatctccccggaaatct
ggacaccctcattctccttttgccaaagtgtcgtctcctattggctcctcatctccgaaa
ggtgtctctatggtcctttcctctggattaccctctctgtccccatatgtgtccactgtc
caccactctgaacagtctgtgatcatgcccccacataacgctcacagcaacattggacga
atgtcgccacaccgcgtgggcccgatagggcaccttactccgggcgaggtacgagtgaac
actcctcctctctctatgatgaactatgccattcactctgagagcctcacctcctcttgg
ccacctggccagcagagacccatatctccccaggccgtagggaacagggaaatggtcctc
aaggttaacacagccaatgcaagaagccatgatggagaagaagaagcaaggcgtttccat
acagctctcggaagaccagctgctcaactgaaaccagaatccataccagcagaatatcgt
ggagctctccctagtggtttacccatcgatcgattcaacatgtcaccgagagacatgcga
gtactcattcaccaccagcagagcgatcgtcccactgcggaactacaccaggtccccgag
aacatgccgagatcttcaactcctaccagcatggcggcatctctctcacctcggccacac
ttgttagcaaagggagtgtctgagaaggacccctcgaaaacatccgagctgaggagggca
cagacacctcccagtaaggagggaatgatggcgatccgtagtgcaatgcctccgatggct
tctcctcagagagttcagctgatgacaccaggagctgggacgtcctttcctgaatattcc
aacatgtatacaaacctacggcccacccacgctcagtatgctgataattctccaatgggg
attaaccagtccacccacagcatcccaccgtcacagggagttcaagagccagagtcaagt
cagcctcaatctgaagctaaagcggagttggttggacatcagcctgtgaacatggtgcaa
cttctgacgaaataccccattgtgtggcaaggcctgctggcgctgaagaacgacaccgcc
gcggtgcagctgcacttcctgtgtggaaacaaggccctgggcctgcggtcgctgcctctg
ccggagagcggcgggatcctgcgcatcgtgcagcggatgaggctggaggcgcagcagctc
gagggcgtcgcgcgcaggatgacgggggagagtgatttctgcctgctgttggccatgccg
tgtggcgtcaaccaggacgacgtgctgaaccagacgcaggcgctcaaatctgccttcatc
aattacctgcaggccaaactagcggcggggatcatcaacgtgcccaaccccggctccaat
cagccggcgtatgtgctgcagatcttcccgccgtgtgagttctctgagagtcacctgtcc
cgcctggccccggacctgctgagccagatctccagcatctccccgcacctgatgatcgtc
atcacctctgtgtga
DBGET
integrated database retrieval system
