Rhinichthys klamathensis goyatoka (western speckled dace): 130073148
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Entry
130073148 CDS
T09701
Symbol
tiam1b
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04530
Tight junction
rkg04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130073148 (tiam1b)
09142 Cell motility
04810 Regulation of actin cytoskeleton
130073148 (tiam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
130073148 (tiam1b)
Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
130073148 (tiam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130073148
NCBI-ProteinID:
XP_056094551
LinkDB
All DBs
Position
Unknown
AA seq
1582 aa
AA seq
DB search
MGNAESHSGGHGYYGAGQRHLSRKHMSRSLRLSSKQTYCSRRTPSGKPEHRNSETSTRSS
STPSIPQSLADHGLEPFNDSDMLPDFSGPIWVDRVAMNLRPVSFHNHPAHSPTPSHTGTA
KQASQDDDAKPPEDTTLHTRDGSQDGSSFKKKRSKSADMWREDSLEVSLSDMSQEHLTST
EEIGDTPEDCEARRQELLDSNRANSLDGLYGPKSPTCRPTHGRYAKWHKGGTTSREGDED
KMISPCEDDVAAYAAYTLPCRRSHCLSEGPTNQQGAMQGRRAQTIQDVTAGDGSDYEDSG
IDGLTGDSEASQHQARRYKTMSASFSVYSTSAGGVFTGSDSGSSSGAGAGPSDGTQGVYE
NFRQELEQNVSPAEVPEERSSAFSDEQSSVTLSSAYHTDPLLNVAAVQGTVRKAGRLAVK
NFLVHKKNKKVELAPRRKWKSYWVSLKGCTLFFYETDGRSGIDHNSIPKHAVWAENSIVQ
AVPEHPKKDFVFCLSNSLGDSFLFQTCSQTELENWITAIHSACAAAFARQHHREDTVRLL
RAEIRKLEQKIDMDEKMKKMGDMQLSAVTDSKKRKTILEQIFLWEQNLEQFHMDLFRFRC
YLSSLQGGELPNPKRLLAFASRPTKLAMGRLGIFSVSSFHALVAARTESGVRRRTQAMSR
STSKRKSRFSSLWGLDTHSKRKSKGHPSINQVFAEGEDPVKSPLEGMFEGSASETTKDTK
TPVKGLPRASTDHDIWSRDHLTPSWVLLPNDQPVLAIIQPGESALDMLDTICKAHQLDAT
KHYVRLKFLIENQVQFYIPKPEEDIYDLLYKEIELCCKIRKVIQFDRDESCMIGYGFSIS
VVEEDSVQQLYITDVRAGGLAFAKGLNAGDEILQLNGKDSRTLTFADMKVAFAQVSLSLT
VNTLPPVERRQLCFLPPRRSDAVDNLYTDIFSQSQEEILDDGVGLIVDSSGDGLDDNSEL
FAEFDEYGKSTEQVAAFCRSLHEMNPSSEVVSPSSGPESSSLPPSNATPRQLSDADKLRK
VICELVETERTYVKDLNCLIGRYLTPLQKESFLTQDELDVLFGNLLEMLEFQVEFLKTLE
DGTRLVPDLEKLERVEEFKKILFSLGGSFLYYADRFKIYSAFCASHTKVPKVLVKAKTDA
AFKAFLDERNPKQQHSSTLESFLIKPIQRVLKYPLLLRELHSLTDPDSEEHYHLNVAMKA
MNTVASHINEMQKIHEEFGAVFDLLISEQTGEKKEVADLSMGDLLLHTSVTWINPSSSLG
KCKKEPQLATFVFKTAVVFICKDYSKQKKKMGGSHRASVSGEEKDPFRFRHMIPTDALQV
RTLSNTDGDNAAVCEIIHVKSESEGRPERVFQLCCSSPESKKDFLKMVHSILRDKQRRQL
LKTESLPPNQQYVPFGGKRLCALKGARPAMNRAVSAPTRTLGRRKLVRNRFTIDTDIVFD
TEPDSDSPDSQHAQQQSVIPAGDTDRWVEEQFDLQRYEEQEHDVKETDILSDDDDFSQSA
LSPSTEPDLEGPLSALSLEGDTEEEEEDEEAGSKKDYKSQHAKLSHVGKQCAMSVASVDE
QALPDEVIWVRRDSSAESETQS
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgggtaacgcagaaagccatagtggcgggcatggttattatggagccggtcagcggcac
ctctcccgtaagcacatgtcccgctcgctccgtctgtccagcaagcagacgtactgttcc
cgccgaacgccttccggaaagccggagcaccgcaactccgagaccagcacgcgctccagc
agcactcccagcatccctcagtcactcgcggaccacggcctggagcccttcaacgactcc
gacatgctccccgacttcagcggccccatttgggtggaccgtgtggccatgaatctcaga
cccgtgtccttccacaaccatccggcacattctcccacgccgtcccacaccggcaccgct
aaacaggcctcacaggacgacgacgccaagccaccagaggacacgactctgcacactcgg
gacggctcccaagacggctccagcttcaagaagaagcgctccaagtctgcggacatgtgg
agggaggactcgctggaggtgtccttatccgacatgagccaggagcacctgaccagcacc
gaggagatcggagacactcctgaagactgtgaagcccgtcgccaggagctgctggactcg
aaccgcgccaattccttagacgggctctacggaccgaagagtcccacttgcaggccaaca
catggacgctatgccaaatggcacaaaggtgggactacaagcagagagggggacgaggat
aaaatgatctcgccctgtgaggatgatgtcgctgcttacgccgcatatacactgccctgc
cgccgctctcactgtctgtccgagggacccaccaatcagcaaggagccatgcaagggagg
cgggcacaaaccatacaggatgtcacggctggagacggcagtgattatgaggacagcggg
atcgacgggctgacgggggacagcgaggcgtctcagcatcaggctcgccgctataagacc
atgtctgcgtcgttctccgtctactccacgtcagcagggggcgtcttcaccgggagcgac
agcgggagcagcagcggggccggagcgggaccctccgatggcacacagggagtgtatgag
aacttccgtcaggagctggagcagaacgtgagcccggccgaggttcccgaggagagaagc
tcagcgttcagtgatgagcagagcagtgtgaccctgagctccgcctaccacaccgacccg
ctgctgaacgtggccgccgtacaggggacggtgcgcaaagctggacgcctcgccgtcaaa
aacttcctggtgcataaaaagaacaagaaggtggagcttgcccctcgccgcaagtggaag
agctactgggtgtccctcaaaggatgcactctgtttttctacgagacagacgggcgatcg
ggcatcgatcacaacagcatccctaaacatgccgtgtgggccgagaacagcatcgtccag
gccgtcccggaacaccccaaaaaagatttcgtcttctgcctgagtaactcacttggagac
tcctttctttttcagacctgcagtcagacagagcttgaaaactggatcacggccatccac
tcagcctgtgccgcggccttcgcccgccagcatcaccgcgaagacacagtgcgtctgctg
cgcgcggagatacgaaagctggagcagaagatcgacatggatgagaagatgaagaagatg
ggagatatgcagctctctgctgtcaccgactccaagaagaggaagaccattctggagcag
attttcctgtgggagcagaatttagagcagttccacatggatctgtttcggtttcgctgt
tacctgtccagcctgcagggcggcgagcttcccaaccccaaacgcctgctggccttcgcc
tcccgacccactaaactggccatgggccgactgggcatcttttcggtctcctccttccat
gcgctggtggcggctcgcactgagagcggcgtgaggcgaaggacacaggcgatgtcacgc
tcaaccagcaaacgcaagagtcgcttctcctcactgtggggtctggacacccactccaag
agaaagagtaaaggtcatcccagcattaaccaggtttttgcagaaggagaagatccagtt
aaaagtcctctagaaggcatgtttgagggatctgctagtgagacaacgaaagacaccaag
accccagtgaaaggtctgccaagagccagcacggatcatgacatctggtccagagaccac
ctcactccatcatgggtgttgctgccaaacgaccagcctgtgttagccatcatccagccc
ggagagtcggccctcgacatgctggacactatctgcaaggctcaccaactggacgccact
aaacactacgtgcggcttaagttcctcattgagaaccaagtgcagttctacatccccaaa
ccggaggaggatatttatgatctgctgtataaggaaatcgagctgtgctgtaagatccgg
aaggtgatccagtttgatcgggatgaatcctgcatgatcggctacggtttttccatctct
gtggtggaggaggacagcgtgcagcagctctacatcactgacgtgagagctggaggatta
gcgttcgccaaaggtctgaacgcaggagacgagattctccagctgaacgggaaggactcc
cgcactctgaccttcgctgacatgaaggtggcgttcgctcaggtctctctctctctcacc
gtaaacacactgccccctgttgagcgccggcagctctgcttcctcccgccgagacgttcg
gacgctgtggacaatctctacacggacatcttctctcagagtcaggaggagattcttgac
gatggcgtgggtctgattgtggattcttcaggagacggtttagacgacaactcggagctc
ttcgctgagttcgatgaatatggaaagagtacggagcaggtcgcagctttctgtcgcagt
cttcacgaaatgaatccctcatccgaagtcgtctctccctcgtccggcccggagtcttcc
tcgctccctccgagcaacgccaccccgcgccagctgtccgatgccgacaaactccgcaaa
gtcatctgcgaactggtggagacggagcgcacctacgtcaaagatctgaactgtttgatc
gggcgatatctaacccctctgcagaaggagtctttcctcactcaggacgagttggacgtg
ctgtttgggaacctcctggaaatgctggaattccaggtggagtttttgaagactctggaa
gacggaacccgactggtgccggacctggagaaactggagcgagtggaagagttcaagaaa
atcctcttttctctgggtggctcgttcctgtattacgccgaccgcttcaagatctacagc
gctttctgtgccagccacaccaaagtgcccaaagtgctggtcaaagcaaagacagacgcg
gccttcaaggcgttcctggacgagcgcaaccccaaacagcagcattcgtccacgctggag
tcgttcctgatcaaacccatccagagagtgctgaaataccctctgctgctgagagaactg
cactcgctcaccgaccccgacagcgaggagcactaccatctgaacgttgcaatgaaggcc
atgaacacggtggccagtcacatcaacgagatgcagaagatccacgaggagtttggagcc
gtctttgacctcctcatctctgaacagactggagaaaagaaagaggttgctgacttgtct
atgggagatttactcctccacaccagcgtgacatggatcaacccgtcctcctcactaggg
aagtgcaagaaagagccacagctggccacattcgtgtttaaaaccgctgttgtgttcatc
tgtaaagattactccaagcagaagaagaaaatgggtggttctcatagagcatcggtctca
ggtgaggagaaagatccgttccgtttccgccacatgatccccactgatgcgcttcaggtg
cgcacactgtccaatacagacggagacaacgcagccgtttgtgagatcatccatgtgaag
tctgaatcagagggaagacccgagagagtgtttcagctctgctgcagctctccagagagt
aagaaagacttcttgaagatggttcactccatcctgagagataaacagcgccgtcagctg
ttgaagacagagagtcttcctccaaatcagcagtatgttccctttggaggaaaacgcctg
tgcgctcttaaaggagcccgaccggccatgaacagagcagtttctgctcctactcgcact
ctgggccggaggaaactggtgcgaaaccgcttcaccatcgacacggacatcgttttcgac
accgagcccgacagcgactcgccggactcccagcatgctcagcagcagagcgtcatcccg
gcgggcgacaccgaccgctgggtggaggaacagttcgacctccagcgctacgaggagcag
gaacacgacgtgaaggaaacagacatcctgagcgacgacgacgacttctctcagtccgcc
ctgagcccgtccaccgagccggacctggagggaccgctttctgccctctcgctggaggga
gacacagaggaggaggaggaggacgaggaagcggggagcaagaaggactacaaatcccag
catgccaagctctctcatgtagggaagcagtgcgccatgtcagtggccagtgtggatgag
caggcgctgcctgatgaggtcatctgggtgcgacgggacagcagcgcagagagcgagaca
cagagctga
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integrated database retrieval system
