Rhinichthys klamathensis goyatoka (western speckled dace): 130075459
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Entry
130075459 CDS
T09701
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04115
p53 signaling pathway
rkg04145
Phagosome
rkg04148
Efferocytosis
rkg04350
TGF-beta signaling pathway
rkg04510
Focal adhesion
rkg04512
ECM-receptor interaction
rkg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130075459 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130075459 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
130075459 (thbs1b)
04148 Efferocytosis
130075459 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
130075459 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
130075459 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130075459 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130075459 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130075459 (thbs1b)
Membrane trafficking [BR:
rkg04131
]
Endocytosis
Phagocytosis
Opsonins
130075459 (thbs1b)
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130075459 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
TSP1_CCN
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
130075459
NCBI-ProteinID:
XP_056096012
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MKSSAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLVNFKQFKHTRGSLLTVEKNDGSGPIFEIVS
NGKANTLDIVFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA
SIQSILTQETPGVASLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSIMTDII
TLDNPINGSRPAIRTDYTGHKTKDLQMICGFSCEELAGMFKELKGLGVVVQKLSKELSKV
TDENNMLMNHIGIHAGVCIHNGIVHKNKEEWTVDDCTECTCQKSATVCRKISCPLIPCAN
ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ
TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEGR
QTERCEKSPCPINGGWGPWSPWDTCSGTCGGGVQNRKRLCNNPVPKYDGKDCVGDAKASQ
ICNKQACPIDGCLSSPCFEGAQCTSFPDGSWKCGKCPTGYTGNGINCKDINECEDVPDAC
FEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDAAAKKQVCTPRNPCLDGSHDCNK
NARCNYLGHFSDPMYRCECRPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCP
NLPNSGQEDYDKDGIGDACDNDDDDDGIPDDRDNCPLIFNPRQYDYDRDDVGDRCDNCPY
NSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDLDGVGDQCDNCPLE
HNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDD
NDGIPDDKDNCRLVFNPDQLDSDGNGRGDACKDDFDQDNVLDIYDVCPENFDISVTDFRK
FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERD
DDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNA
LWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY
DKTYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcaagtgcaatctttttgctactgatgctttggaactgcgagagcgcgagagtc
gcagaaagtcgagacgacaacagtgtttacgatctgtttgagctcgtccaagtgccgagg
aaaaaccacggggtcaccctggtgaaaggcgacgacccgtacagccccgcctacaagatc
ctgaaccccgacctgattcccccggttcccgagagcgccttcagggacctaatcgattcc
attcatgccgagagaggatttctgctcctggtcaatttcaagcagttcaagcacacacgg
ggaagccttctgactgtggagaagaatgacggctccggacccatttttgaaatcgtttcc
aacggaaaagccaacactctggacattgtgttttccactgaaaacaagcaacaggtcgtg
tccatcgaggaagcggatttggcggtgggacactggaaaaacatcactcttttcgtgcag
gaggacagggttcagttctacgtgggatgtgaagaggtgaacactgcggagctcgatgct
tcgatccagtcgatcctcactcaggagaccccaggtgtggcgagcttgaggatcggcaag
ggcgcagtaaaggacaggtttatgggggttttgcaaaacgtgcgctttgtgttcggaacc
acactggatgcgattctgaggaataaaggatgccaaaactcaattatgactgatatcatc
acccttgacaatcccataaatggatccagacctgcaatcaggactgattacactggccac
aaaacaaaagatctacagatgatttgtggcttctcttgtgaggaactggctggcatgttt
aaggaactgaaaggtcttggagtggtggtgcaaaaactgtccaaagaactcagcaaagtg
acggacgagaataacatgctcatgaatcacattggcattcatgctggtgtctgtattcac
aatggaattgtgcacaaaaacaaggaggaatggacggtggacgattgcacagagtgcact
tgccagaaatctgcaacggtgtgccgcaagatttcgtgtcccctaatcccgtgtgcaaac
gccacagtgcctgatggggaatgctgccctcgttgtggaaccccgagcgactccgctgag
gatggctggtccccctggtctgaatggacccattgttctgtgtcttgtggaaggggcatt
cagcagcgcggccgctcttgcgaccgcatcaataacaactgcgagggcacgtcggtgcag
acgagagactgctacctccaggagtgtgacaagcgctttaagcaagatggcagctggagt
cactggtcaccctggtcctcctgctcggtcacctgtggtgctggcgttatcactcgcatt
cgtctctgtaactctccaacacctcaaatggaaggcaaagattgccagggtgaaggtcgg
caaactgagaggtgtgagaaatcaccatgtccaatcaatggtggctggggaccatggtca
ccctgggacacttgctccggtacctgtggcggcggcgtccaaaatcgtaagcgtctttgt
aataatccagtgcctaagtatgacggcaaagactgtgtgggagacgcaaaagccagccag
atttgcaacaaacaagcctgtccaattgatggatgtctttcaagtccatgctttgaagga
gcccagtgtacaagcttcccagatggctcctggaaatgtggaaaatgccccacaggatac
actggcaatggaatcaactgcaaggatatcaatgagtgtgaggatgtccctgatgcctgc
tttgaatttaatggagtccataggtgtgagaacacagtgccgggctacaactgcctgcca
tgccccactcgctacaccggcccacagccatttggtcgaggagtggaggacgctgctgcc
aagaaacaggtgtgcacgcctcgtaatccctgcctcgatggaagccacgactgcaataag
aacgctcgctgcaactacctgggccatttctcagaccctatgtaccgctgtgagtgcaga
cctggctttgctggaaatggacacatttgtggagaggacactgatcttgatggctggcct
aatgctgatcttgtgtgtgtcgagaacgcaacctatcactgcaaaaaggacaactgcccc
aatcttcccaactctgggcaagaggactacgacaaggatggaattggtgatgcttgtgat
aatgatgatgatgacgacggcattcctgatgacagggacaactgcccactcatcttcaac
ccaagacagtacgactatgatcgcgatgacgtgggagaccgctgcgataactgtccgtac
aacagtaacccagaccaaactgacactgacaacaatggtgaaggtgacgcctgtgctgtg
gacattgatggagatggtattttgaatgagaatgataactgcccatatctatacaatgtc
gaccagaaagacactgatctcgatggagttggtgaccagtgtgacaactgccctctagaa
cacaacccagatcagctcgactctgattcggaccgtgttggagacaaatgtgacagcaac
caggatatcgatgaggacggtcaccaaaacaaccttgacaactgcccgtacatccccaat
gcgaaccaggctgaccacgacaaggatggtaaaggagatgcctgtgactacgatgatgat
aatgatggcatccctgatgacaaagacaactgcagattggttttcaatccagatcaactg
gattctgatggcaacggacgtggtgatgcctgtaaagacgactttgaccaggacaatgtc
ctagatatctatgatgtgtgtcctgagaactttgacattagtgtaacagacttccgcaaa
ttccagatggtacctctggatcccaagggcacttctcagattgaccccaactgggtggtg
cgccaccaaggaaaagaactggttcagacagtcaactgtgaccccggcattgctgttggt
tttgatgaattcaattcagtcgacttcagtggaacattcttcatcaacacagagagggat
gatgactatgccggctttgttttcggataccaatccagctctcgcttctatgtggtcatg
tggaaacagatcacacagacctactggtccagcacacctaccaaagcacagggttactca
gggctatcaatcaaagtggttaattccaccacagggccaggcgagcatctgaggaacgcc
ctttggcacaccggagacactccaggacaggtgcgaacactgtggcatgacccgaagaac
gtgggttggaaggacttcactgcttacagatggcacctgactcatagaccaagaactgga
catataagagtggtcatgtatgaaggcaaaaagatcatggcagattctggcagaatttat
gacaaaacatatgcaggcggaagactgggtctctttgtcttctcacaagagatggtgtac
ttctcagacctcaaatacgaatgcagagatgtgtaa
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