Rhinichthys klamathensis goyatoka (western speckled dace): 130077123
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Entry
130077123 CDS
T09701
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04010
MAPK signaling pathway
rkg04120
Ubiquitin mediated proteolysis
rkg04140
Autophagy - animal
rkg04144
Endocytosis
rkg04620
Toll-like receptor signaling pathway
rkg04621
NOD-like receptor signaling pathway
rkg04622
RIG-I-like receptor signaling pathway
rkg05132
Salmonella infection
rkg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130077123 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130077123 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130077123 (traf6)
04140 Autophagy - animal
130077123 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
130077123 (traf6)
04621 NOD-like receptor signaling pathway
130077123 (traf6)
04622 RIG-I-like receptor signaling pathway
130077123 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130077123 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
130077123 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130077123 (traf6)
04121 Ubiquitin system [BR:
rkg04121
]
130077123 (traf6)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130077123 (traf6)
Membrane trafficking [BR:
rkg04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
130077123 (traf6)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
130077123 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
TRAF3_RING
zf-C3HC4_4
zf-RING_5
Sina_ZnF
RING_XB3-XBAT31
HOOK
zf-TRAF_2
TRAF6_Z2
DM
DUF4472
FrsA-like
U-box
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130077123
NCBI-ProteinID:
XP_056098259
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MACNDMDKSSLDDGCCEGEYSSCALAMEKERDSYLSPTENPSTISVSSSIPPDQQGYDVE
FDPPLESKYECPICLMGLRSAVQTPCGHRFCNSCIRKSIRDTGQKCPVDNEVLLEEQLFA
DNFAKREILSLTIRCPNVGCSDKMELRQLERHLSQCKFATAPCPQCLESVRKSHLDEHKS
QQCLQRLMTCPACAGSFVYANKQIHEQICPFANTVCEYCEMELIRDQLALHCDTDCLKAP
VACTFSTFGCREKMPRNELAQHMQEFTQMHMRYMAEFLRSQTLNGCLMPSVAAHSSSDER
GASSRAADSCQCKQELINLRETVLELEGRLVRQDQQIRELCIHNETQKNQVTELRRKLSS
LEEATRELEAQQYQGVYVWRLENFSLHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQ
TPSAPRCSNYISLFVHTMQGEFDSQLSWPFQGTIRLAVLDQVEGQHHVEVMETKPDLQAF
QRPTVQRNPKGFGYVTFLHLQALRQRGFVKEDVLLVRCEVTPRFDASLRREGVQPRGPEP
SL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcaacgacatggataagtccagcctcgatgatggctgctgtgagggcgaatac
tccagttgtgcattagccatggagaaagagagagattcgtatctgagcccgacagagaac
ccctccaccatcagtgtctcttctagtatccccccagaccagcaaggctatgatgtagag
tttgaccctccactagagagcaagtatgagtgccctatctgtctaatgggtctccgctca
gcagtacagacaccatgtggacatcgattctgcaactcgtgcatcaggaagtccatcagg
gacacagggcaaaaatgtccagttgacaatgaggtgctgctcgaggaacagctcttcgct
gataactttgccaaacgagagatcctctcgctcaccatcagatgtcctaatgtaggatgc
agtgataaaatggagttgcgccaactggagagacacttgtctcagtgcaagtttgccaca
gcgccatgccctcagtgtctggagtctgttcgcaagagccatctggatgaacacaagagc
cagcagtgcttacagcggctcatgacctgccctgcctgcgcagggagttttgtgtatgct
aacaaacagattcatgaacagatttgtcctttcgccaatacggtgtgtgaatattgcgaa
atggagcttattcgggatcagttggcattgcactgtgacacagactgtctgaaagcacct
gtagcctgtactttcagcacttttggttgtcgtgaaaagatgccgagaaatgaacttgcc
cagcacatgcaggaatttacacagatgcacatgcgctacatggctgagtttctgcgtagc
caaactctcaatggctgcctaatgccgtcggttgccgcccactcttcgtcagacgaacgt
ggtgcctcttcccgggcggcagattcttgccagtgtaaacaggagctgataaacctacgg
gagactgtcttggagctggagggtcggctggtgcgtcaagaccaacagatccgggagctg
tgcatccacaatgaaacacagaaaaaccaggtcaccgaactacgccgaaagctgagctcc
ctggaagaggccacccgagagctggaagcccagcagtaccaaggcgtctacgtgtggcgc
ttggagaacttctcactccacctgcgcaaccaagaggctggtcagcccatagtcctccac
agcccacctttttacacgggccggccggggtacaaactctgtctccgactgcatctgcaa
acccccagcgcccctcgctgttccaactacatctcgcttttcgtgcacactatgcagggt
gagtttgacagccagctctcctggcccttccagggtacgatccgactggcagtgttggac
caggtcgaggggcagcaccatgtggaagtgatggagaccaagccagacctacaggcgttc
cagaggcccaccgtgcaacgcaaccccaagggtttcggctatgttactttcctgcaccta
caggcgttgcggcagcgtgggtttgtgaaagaggacgtgctgttggtgcgctgcgaggtc
acaccacgattcgatgctagcctcaggagggagggggtccaaccccggggcccagaacct
tcactttga
DBGET
integrated database retrieval system
