KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130078167
Entry
130078167         CDS       T09701                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    130078167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rkg03000]
    130078167
   04121 Ubiquitin system [BR:rkg04121]
    130078167
   03036 Chromosome and associated proteins [BR:rkg03036]
    130078167
Enzymes [BR:rkg01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     130078167
Transcription factors [BR:rkg03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    130078167
Ubiquitin system [BR:rkg04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     130078167
Chromosome and associated proteins [BR:rkg03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    130078167
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     130078167
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box Cupin_8 JmjC LRR_4 LRR_At1g61320_AtMIF1 PsbP
Other DBs
NCBI-GeneID: 130078167
NCBI-ProteinID: XP_056099664
LinkDB
Position
Unknown
AA seq 1286 aa
MEACAESGRKLRSICRRMYDENEDLSDVEEITNIRGFSLEDKLESNLYNSELVQHMEGKD
FTYEYVQREALRTPLIFKAKDGLGIRMPDPEFTVSEIKGLVGSRRNVDVMDVSTQKGSEM
SMAQFVRYYETPEDERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPRHLKQKQ
TEATNVMSEMKYPKVQRYCLMSVKGCFTDFHIDFGGTSVWYHVFKGRKVFWLIPPSSHNL
SLYEDWVLSGKQSDVFLGDRADSCQRVDLKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNVPMQLTVYEIENRTKVHSKFRYPFFYEMCWYVLERYVNCLTRRSHLSLELRGHAAEP
KLVAECLVAVPRLDMEENSCETQLERAEGVTQPSSAVAPYQTFKPPANDSDDSSKSLPSE
CPKTPSGSPGTEHSGKWTHLTEFELSGLKALVEKLESLPETKRCVPEGIEDPQALLDDVK
VVLKEHADDNPKLAITGSPIVCWPKKTSKPRPLNRPKPKMGSSPSAAPCSTAGGVKLSSS
RGSSSARRRRTRCRKCEACTRKECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTA
VCLVCGEAGKEDTVENEEDKFNWMLMECSICNEILHPACLKEKDSGGVVNDELPNCWECP
KCNHAGKIGKATKQKRGPGFKYASNLPGSLLKEQRMVRDIKEELDSNMSTESYTPTLSPV
MKKKTEREDNPTCKSEDAFKKRSPKMEDNPLRRKRKLFEKDSDSDSNVRKKKKRSKPDAL
STSNVLGQIKTEREDDDEEDDEDKIQELDRRPFSFVPSEEDDGDDEREEEEEETMKEKSS
REENGKLLHKTSATWAGDQPQGRTQAGPSNDTGVDAQLRIQRKTKRKPRLPNKELSKELS
KQLNQEIQKTEDRLAHQNSRTVKTEPDSDGEDRKPLNNGSSHLRDWLGPKRELNGSLREQ
SPASWIRTTPTPIFRPTPCRSPPKCVQMERHVIRPPPISPPPDRLPLDDGKNHIMHREVW
MAVFSHLAHQDLCVCMQVCKTWNRWCCDKRLWTKIDLNRCKSITPLMLSGIIRRQPVSLD
LSWTNISKKQLSWLINRLPGLRVLLLAGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDNQ
IRDLLSPPTDNRPGQLDSRSKLRNVEDLCLAGLDITDESLKLIIKHMPSLSQLDLSYCNH
ITDQSVNILTAAGTTTRDSLTHINLSVCNKVTDLSLTYFKRCGNVCHIDLRCCKQVTKEG
CEQFIAEMSVSVQFGLIEEKLLSKLS
NT seq 3861 nt   +upstreamnt  +downstreamnt
atggaggcgtgtgcggaatccggacgcaaactgcgctcaatctgcagaaggatgtacgat
gagaacgaggacttgtcagatgtggaggaaatcacaaacatcaggggcttcagcttggag
gacaaacttgagagcaatttatacaacagtgaacttgttcagcatatggagggaaaagat
tttacctatgaatatgttcaaagagaggcactccgaaccccactcatatttaaagccaaa
gatggactgggaattagaatgccggatccagaatttactgtaagtgaaatcaagggtttg
gttggcagcagacggaatgttgatgtgatggacgttagtacgcagaagggctccgagatg
agcatggcgcaattcgtccgctactatgagacgcccgaggatgagcgggacaagctgttc
aacgtcatcagcctggagttcagtcacaccaaactggagaacttgatcaagagacctacg
gtggtggatctggtggactgggtggacaatatgtggccgcggcatcttaagcagaaacaa
actgaagccacaaacgtcatgtctgagatgaaatatcccaaagttcagagatactgtctg
atgagtgtaaaaggctgtttcactgacttccacattgacttcggcggcacatcggtatgg
tatcatgtcttcaaaggaaggaaggtcttttggctgattcctccaagctcacacaatctg
tctctatatgaggactgggtgctgtcaggcaaacagagcgatgtcttcctgggtgaccgt
gcagacagctgtcagcgagtagatctgaaacagggctacacgttcttcatcccttcaggt
tggatccatgccgtctacactccagaggacaccctggtgtttggcgggaatattctacac
agttttaacgttcccatgcagctcactgtctatgaaattgagaacagaacaaaggtgcac
tccaaattccgctaccctttcttctatgagatgtgctggtatgtgctggagaggtacgtg
aactgcttgaccagacgttcgcacctcagcctggagttacgcggtcacgctgctgaaccc
aagcttgtagccgagtgtctcgtcgctgttccccggctggacatggaggagaactcgtgt
gagacgcagttagagagggcagagggggtgacccagccctcctcggctgtcgctccctat
cagaccttcaaacccccagccaatgattctgatgacagctccaagtccctcccttcagag
tgtcccaagactccttctggctcacctggaacagagcactcggggaaatggacccacttg
acagagtttgagttgagtggactcaaagccctggtggagaagctggaatcccttccagag
acgaagaggtgtgttccagagggcatcgaggatccacaagcactgctagatgacgtgaag
gttgtcttgaaggaacatgcagatgacaatccaaagttggccatcactggttctcctatt
gtatgctggccaaagaagacaagcaagccacggccgcttaatcggcccaaacccaagatg
ggctcatctccatctgctgctccatgctcgacagcaggtggagtgaagctctcatccagt
cgtggttcatctagtgcccggcgcaggcgaacacgctgcaggaagtgtgaggcatgtacg
cgcaaagagtgtggggagtgccacttctgcaaggacatgaagaagtttggtggaccaggc
cgtatgaagcagtcctgcatcatgagacagtgcatagcgcctgttctacctcacactgct
gtgtgtctagtgtgtggagaggctgggaaagaagacacagtggagaatgaagaggacaag
ttcaactggatgctcatggagtgctctatctgcaatgagatcctccatccagcatgtttg
aaggagaaggatagtggcggcgttgtgaatgatgagttaccaaattgctgggagtgtcct
aaatgcaatcatgctggaaagatagggaaagccacgaagcaaaaaagaggcccagggttt
aagtacgcctccaatctccctggctctttgctcaaagagcagcgaatggtccgggacata
aaggaagagctggactcgaacatgtctacagagtcctacacccctactctttcacctgtc
atgaagaagaagaccgaacgagaggacaatcctacctgcaagtcagaagacgcatttaaa
aaacgttcccccaaaatggaggacaacccactccgcaggaagagaaaactctttgaaaag
gactcagactcagattccaatgtcaggaaaaagaagaagcgctcaaagcctgatgctctt
tcgacctctaatgtcctgggacagatcaagacagaaagagaggatgatgatgaggaggat
gatgaggataaaatacaagaactagacaggagacccttcagttttgtaccctcagaagag
gacgatggagatgatgaaagggaggaagaagaagaggagacaatgaaagagaagagtagc
cgagaggagaatgggaagcttttacacaagacctctgctacatgggcaggtgaccaacca
cagggacgtacccaggcggggcccagcaacgacacaggtgttgatgcgcagttgaggatc
cagcgaaaaaccaaacgtaaacctcgcctgcccaacaaagaactgagcaaggaactgagc
aaacagctcaaccaggaaatccaaaagacggaggatcgtctggctcatcaaaacagcagg
acagtgaagacagaaccagatagtgatggagaggacagaaaaccactgaataatggcagc
agccatctgagagactggctgggccctaagcgggagctaaacggatccttgcgagaacag
tccccggcgagttggatcaggactacgcctacccctatcttccggccaacgccttgccgc
tctccaccgaaatgtgttcagatggagcgtcatgtcattcgtccccctccgatcagcccc
ccgccggaccgtctgcctctagatgatggcaagaatcacatcatgcacagagaggtgtgg
atggcagtgttcagccacctcgcacatcaagacctgtgtgtctgcatgcaggtctgcaag
acctggaacagatggtgttgtgataaaagactgtggaccaagatcgatcttaaccggtgc
aagtcaatcactcctctcatgctgagcggcattatccgaagacagccggtctccctggac
ctgagctggaccaacatctccaagaagcagctcagctggctaatcaacagattacctggt
ctgagggttttgttgctggcaggctgctcgtgggcagctgtatctgctttatgcacatcc
agttgtcctttgctaagaactctagatgtgcagtgggtagagggactcaaggacaaccag
ataagagacttactctctccgccaacagacaacagaccaggtcagttggacagtagaagt
aaactgaggaatgtggaggatctctgtctagctggtctagacatcacagatgagtccctg
aagctgatcattaaacacatgccatcactgtctcaattggaccttagttactgtaaccac
atcaccgaccagagcgtcaacatcctcacggcagccggcaccacgaccagagactctctc
actcacatcaacctgtcagtttgtaacaaagttacagacctgtcactaacctacttcaag
cgctgcggaaacgtttgtcacattgacttgcggtgctgcaaacaggtgaccaaagagggt
tgcgagcagttcatcgcagagatgtctgtcagtgtgcagttcggacttattgaggaaaaa
ctactgagcaaactgagctag

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