Rhinichthys klamathensis goyatoka (western speckled dace): 130078790
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Entry
130078790 CDS
T09701
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
130078790 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130078790 (irf5)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
130078790 (irf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
130078790
NCBI-ProteinID:
XP_056100435
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MSGQPRRIRLKPWLLAQINSGKYPGLHWLNQERRLFRIPWRHATRHMPTLEEENTIFKAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFGLHYDGTKDTPVQPYKIYEVCDQSVNG
DAGEDEEEELQNFVKLSIDPSSYSAYPPRVDVPFTSSIGDGYNTAHHNPQMNLLGEIIHN
NPNGGAPMTTHLAQPGTGPPEFSSHSAIKIEQGSYPIHGGGLSNGMEMGSGVIPPPALQD
VVSHSVGPPTIVDTPMQEVPSQAENQVHPCISELLSSPHMLPLTDLDIKFQYRGRTAGSL
TVSNPQGCRLYYGNLAPTPEQVELFGPVTLQQVLFPGSAEIPNEKQRFYTDHLLDVMDRG
LILEIRGQDIYAIRLCQCKVFWSGPGVPEQGPPNPMEREMKIRVFSLNNFLQCLISYQKG
EAPTPPPFEIYFCFGEDWPDRKPKEKKLIIVQVVPVVARILTEMFSGELSWSTDSIRLQI
SNPDLKDQTVEQFKELHRLLQSQNTHPTWTQNIH
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcaaccacggaggattcgactgaagccatggctgctggcacagattaacagt
gggaaatacccaggactgcactggctcaatcaagagcgcagactgttccggatcccatgg
agacacgccacccgtcatatgcctaccctggaagaggagaacactatttttaaggcttgg
gctctggaaacaggcaagtaccaggaaggagtagatgagccagatccagcaaaatggaag
gctaacctccgctgtgcacttaacaaaagccgagagttcggactccactatgatggcact
aaggacacccccgtccagccttataagatctatgaggtgtgcgaccagtcagtcaatgga
gatgctggagaggatgaggaagaggagctgcaaaactttgtaaaactctccattgaccct
tcaagctactcagcatatcctcctagagttgacgttccgttcacatcttctattggcgat
ggctataatactgcccaccacaaccctcaaatgaaccttttaggagaaattatccataat
aaccccaacggaggtgctcctatgaccactcatcttgcccagcccggcacaggacctcct
gaattttccagtcacagtgcaattaaaattgagcagggatcatatcccattcatggtgga
ggactctcgaatggtatggaaatggggtctggagttattccgcctcctgctcttcaggat
gtagtctctcattctgttggccctccaaccatagtggacaccccaatgcaagaggtgcca
tctcaagcggagaaccaggttcatccctgcatctcagagctgctgagcagtccacacatg
ttgcccttaactgatctggacatcaagttccagtacaggggtcggacagctggttctttg
accgtcagtaaccctcagggttgtagactttactacggtaacctggcacccacaccagag
caggtggagctgttcggtccagtcactcttcagcaggtactgtttccaggatccgctgag
atcccgaacgaaaagcagaggttctacaccgatcatctgctggatgtgatggaccgaggg
ctgattttggagatcaggggacaagatatctatgccatcaggttgtgccagtgtaaagtg
ttctggtctgggccaggtgtgcctgagcaggggccgcccaatccaatggaaagagagatg
aagataagggtcttcagtctgaacaacttccttcaatgtctcatttcttatcagaaaggg
gaggcaccaactccaccaccctttgagatctacttctgcttcggtgaggactggccagac
agaaagcccaaggagaaaaagctcatcattgtccaggttgttccagttgttgcaagaatc
cttaccgagatgttttcaggcgagctttcgtggtctacagacagtattcggttgcagatc
tccaaccccgacttgaaagaccagacggtggagcagttcaaagagctccatagactgttg
cagagtcaaaacacacaccccacctggactcagaacatccactaa
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