Rhinichthys klamathensis goyatoka (western speckled dace): 130080531
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Entry
130080531 CDS
T09701
Symbol
pcdh15b
Name
(RefSeq) protocadherin-15b isoform X1
KO
K16500
protocadherin-15
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
130080531 (pcdh15b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
rkg03037
]
130080531 (pcdh15b)
04515 Cell adhesion molecules [BR:
rkg04515
]
130080531 (pcdh15b)
Cilium and associated proteins [BR:
rkg03037
]
Primary cilia and associated proteins
USH complex and associated proteins
130080531 (pcdh15b)
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Protocadherins
130080531 (pcdh15b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Cadherin_CELSR2_9th
Cadherin_2
CDH23_a-b
Big_9
Motif
Other DBs
NCBI-GeneID:
130080531
NCBI-ProteinID:
XP_056101904
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MKMRQRSWLYKWLGIGIGVLLLTAASYSQDSEDWQYEECKLSRTGPPATIVAIDEESPNG
TLLVENMQINGRAEDPDRTISLSLRDNHDHWVILDPVKQRLYLNSTGRVLDRDPPSYIQS
IVVQVQCTNELVGTVILHEVRIVVRDRNDNTPRFQQPRYYVAINELTPVGTTIFSGFTGN
NGAVDLDDGPNGQIEYTIRYNPKDPTTNRTFDIPLTLSGSVVLRERLNYEEITRYLVIIQ
ANDRAPNPKDRLTATTTLTVDVLDGDDLGPMFLPCSLVDNTRDCKPLTYRASILELTDPS
RVNPVNVTPPIQAVDQDRNIQPPSDRPGILYSILIGKPVPYAEYFSLNQTTAELQLLKPI
KREQYQHFDLVIKAEQDNGHPLPAFANLHIEVLDENNQAPYFQVATYHGFISESAPLGTT
ISSSANLSTPLAIIALDNDIEETKDPMVRISLDNYNSIFAMTPSGMARYLTLLRPVDHEE
QPSYAFTMIASDGVQESSPVTVNITVIDANDNTPTFPNVSYSVNVYTDMQPGDTVLQLTA
VDADEGPNGLVSYKILAGDQGHFTINDCTGVITVPPSVNLTVGRSYALTVRASDNGPVSQ
RRSSITTVYIEVLPPNNQSPPRFPQLIYSLEINEAMRTGATLLNIQATDRERDPITYTIL
RGDPNNVFEVSQTSGLLLLAKTLDREIVDHYTLTITASDGNPDGTSTATVKIVVTDVNDN
DPEFDPLLARNLTVQEEEANAFVGQVKATDLDLGINGLVRYRLVSHTDLFRISTDGSIFT
AVPLDREERAQYDLVVEASDGAKDPRRTTIALSIKVLDVDDNSPVFSQPAYHVTLAENSP
VGMVILNISALDPDLDANVTYRIRTKEARELFAVNPLTGELMVLHSLDFEKLLPNGTTRT
FVVEAVDGGSGKMPPGLASVTITVLDMNDFPPVFSQMLYRGMVAPNAIKGTVVTTVHAED
LDPPGTAASRFHYKVDLEQFPYSTSIFDVEENSGNVLTRVNLNEEPNTKFSLAVIAYDDG
EPMKFNKTLVEITVLQPSIIPVFTQEEYRFSPVSENAPVGTVTGVILAAAINQTIVYSII
EGNEGGEFVMNNITGVISTAKPLDYERNSSYIIRVEADSMRLVSSNLRAPAKSNTAKVFI
DVQDENDHPPEFTKPFYLGGVAEDAKTFTSVLQVQALDKDTGNFSAMLYRLIIPPTTDGK
DGFVIEPFTGVIKTAIMYRNMRRSYFKFDVVAIDDYGEGLSSSAQVVVSVVNQLDMQVVV
SNVSPTVVEQNKDQLIGILERYVQDQIPGAKVVVESIGPRRFGEGYEQEDYSKSDLMVYA
IDPLTNRALSRQELFKFLDGKLLDINKEFQPYLGRGGRILEIRTPDVVESVKKAVQSVGY
TEGALLALAVIIIMCCIPAILIVIITYRQRQAECAKTARIQMALPTGKSGGAATNNLYEE
LGDSTMRGYGHQEQQQLLRPSLLRPEELSMESGIDPGQDYYTQDYYNYDHGYDLPQYGSR
RKLISPAGMYDEYGEVIMEDDGSYYYSPHESEGECGRKKRIKLIVDREYETSSTGEESAP
ESHRNRLSNVNSHSNINGSIYLAQNGSIIRTRRVAHTNNIKLNSPIRLGKHFKKLDKLAV
THEERIPLNSPIIAGASAGEQNLTTRPSSGSLASSTTGPESIASKSNVVNGGGERTQNVD
EQESTVDNQEVRDPLGSHSDRTQSDEEELWMGPWNNLHIPMTKL
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgcgccagaggtcgtggctctataagtggttgggaataggcattggcgttctt
ctgctcactgctgctagctattctcaagattcagaagactggcagtatgaggagtgcaag
ctctctagaacaggcccacctgccaccattgtagccatagatgaggagagccctaatgga
acccttctggtggagaacatgcagataaacgggagagcagaagaccctgacaggaccatc
tctttatctctccgggacaaccatgaccactgggtcattctggacccggtcaagcagcgc
ttgtatctcaatagcaccggacgagttctggaccgagatcctccctcctacattcagtcc
attgtagtgcaggttcagtgtactaatgagcttgttggcacggtgatcctacacgaagtg
cggatagtcgtccgggatcgaaacgacaacaccccacgctttcagcagccacgctactat
gtagccattaatgagctaacgcctgttggaaccaccatcttctcaggttttacagggaac
aacggggctgttgaccttgatgatggtcctaacggacaaattgaatacaccattcggtac
aaccctaaagatccaaccacaaacaggacattcgacatccctctcaccctgtcaggatct
gtggttctgagagagaggctgaattacgaagagatcacacgctacctggtcatcattcag
gccaacgaccgagctccaaacccaaaggaccggctcaccgccaccactacgcttacggtg
gatgtgttggacggagatgacctgggccccatgtttctaccttgcagcctggtagacaac
acccgagactgcaaacctcttacttaccgcgccagcatcttggagctcacagatccgagc
cgagttaaccctgtcaatgtgactcctcccattcaagctgtggatcaagacagaaacatc
cagcctccatcagaccgcccgggaatcctgtactccattctcatcgggaaaccggtgcca
tatgcagagtatttctccttgaatcagaccacagctgagctccagctcctgaaacccatc
aaaagggaacagtaccagcatttcgacttggtaatcaaggcggagcaggataatggacac
cctctcccagcgtttgccaatctccacattgaggtgcttgatgagaacaatcaggcgccg
tacttccaggtggccacttatcatggattcatctcagaatctgctccgctgggcacaact
atctcgagcagtgccaatctctccacccctctcgccattatcgccctggataacgacatc
gaggagacaaaagatcctatggtgcgcatctctctggacaactacaacagcatctttgca
atgacgcccagtgggatggcacgctacctgacactactgaggcccgtggaccatgaagaa
cagccgagttatgccttcacgatgattgcctcagatggagttcaggagagctctccagtc
actgttaatatcactgtgattgatgccaatgacaacacacccaccttccccaacgtctcc
tacagtgtgaatgtttacacagacatgcagcctggggacaccgtcttacagctgacagca
gtggatgctgatgagggtcccaacgggttggtgagctacaaaatcttggcgggggatcag
ggacacttcaccatcaatgactgcacaggagtgatcaccgtgccacccagtgtcaacctg
accgtgggccgctcctacgccctcaccgttagggcctccgacaacggccctgtgtcccag
agaagaagttccatcactacagtgtatatcgaagtgctgccccccaacaaccagagccct
ccccgtttccctcagctcatatacagcctggagatcaatgaggccatgaggactggagcc
acactgctcaacatacaggcaaccgaccgtgaaagagatcccattacatataccatcctg
agaggagatccaaacaacgtctttgaagtctcccaaacgtctgggctattgttgctggcg
aagacgctggacagagagatcgtggatcactacacgcttactatcacagcctccgatgga
aacccagatgggacctcgactgctacggtgaaaatagtggtgactgatgtcaatgataat
gaccctgagttcgatcctctgctggcccgtaatctcacagttcaagaggaagaggcaaat
gcttttgtgggtcaagtaaaggccactgatctggacctgggcattaacgggctggtccgt
taccggctggtcagtcacacagatctcttcaggatcagcacagacggcagcatcttcaca
gctgtgcccttggaccgtgaggagagggctcagtatgatttggttgtggaggcttcggat
ggggccaaggaccctcgtcggaccaccattgcactctccatcaaagtgctggacgtggat
gacaacagcccagtcttctcccagcctgcctatcacgtcacactggcagaaaacagccca
gtgggcatggtcattctcaatatcagtgcactggaccccgatctggatgcaaacgtcaca
taccgtatcaggaccaaggaggccagagagctgtttgcagtgaaccccctcactggagag
ctgatggtgcttcactcacttgatttcgagaaactcttacctaatgggacaacacgcacc
tttgtggtggaggctgtggatggcggaagcggtaaaatgcccccggggttggcctctgtt
accatcactgtattggacatgaacgacttcccgccagtgttcagtcaaatgctgtaccgg
ggaatggtggcacccaacgcaatcaaggggaccgtagtgaccactgtccatgccgaggac
ctggacccaccgggtacagcggccagtcgatttcactataaagtggatttggagcagttt
ccctacagcactagtatattcgacgtggaggagaactcgggcaatgttctcaccagggtc
aatctgaatgaggagcccaacactaaattcagtttggcggttattgcctatgatgatggg
gagccgatgaagttcaataagactctggtggagatcactgtcctgcagccgtccataatt
cctgtgttcacgcaggaggagtacaggttctctcctgtcagcgagaacgctcccgtggga
acggtcacaggagtcatcttggcggctgccataaaccagaccatcgtctactccatcatc
gaaggaaatgaaggcggtgaatttgtcatgaacaacatcactggagttatcagcactgcc
aagccgctggactatgagagaaacagcagttacatcatccgcgtggaagcagactccatg
aggctggtgtcgtccaacctacgagccccagccaaaagcaacacagcaaaggtcttcatc
gacgtgcaagatgagaacgaccatcctccggagttcactaagcccttttacctcggtggg
gttgcagaggatgccaagaccttcacctctgttttacaggtccaggctctggataaggac
acagggaatttcagtgccatgctgtacaggctgattatccccccaactactgacggcaaa
gacggctttgttattgagcccttcactggcgtaattaagacagccatcatgtacaggaac
atgcggcgctcttacttcaaatttgacgtggttgctatagacgactacggggagggactc
agcagcagcgctcaagtggtggtgtcagtggttaaccagctggacatgcaggtggtcgta
tccaacgtgtcgcccactgtagttgaacagaacaaggatcagctgattgggattttagag
cgctacgtccaggaccagatcccaggagccaaagtagtcgtggaatcaatcgggcctcgg
cgttttggtgagggttatgaacaggaggactactccaaatctgacctgatggtttatgca
attgaccctctaaccaacagagctctctcaagacaagagctcttcaagtttttagatggg
aagttattggatatcaataaggagttccagccctacctaggtcgcggaggacgcattctg
gagatccgcacaccggatgtggtggagagcgtaaagaaggcggttcagtctgttggatac
accgaaggagccctgctggccctggccgtcatcatcatcatgtgctgtatcccagccatt
ctcatcgtcatcatcacctaccgacaacggcaggcagaatgtgcaaaaacagccaggatc
caaatggcgcttcccactggcaaatctggaggtgctgccaccaacaatctgtatgaagag
ctcggcgacagcaccatgagaggctacgggcatcaggagcaacagcagttgcttcggccc
tcactgttgagaccagaggagctctctatggagtctggcattgacccaggacaggactat
tatacacaggattactataactatgaccatggctatgacttgcctcagtatgggagtcga
cggaagctgatctctccagcagggatgtatgatgaatatggagaggtgattatggaagat
gacggcagctactactacagtccacacgagtctgagggagagtgcggtagaaaaaagagg
atcaagctaattgtagatcgtgaatacgagaccagttcaactggagaagaaagtgcccct
gaatcgcacaggaaccgcctatctaatgtgaacagccacagcaacattaatgggagcata
tacttggcccagaatggctcaataatccggacacgacgggtcgcacacaccaacaacatc
aagctcaactctccaatacgactgggaaagcactttaagaaactggacaaacttgctgtt
acgcacgaagagcgaattcctttaaacagccccataatcgcaggcgcctcagcaggtgaa
cagaacctcacgaccaggccctccagtgggtccctggcctccagcaccacaggcccagag
agtatagcttcgaaatcaaacgtggtaaatggtgggggtgaaagaacacaaaatgtggat
gaacaagagtccacagtggacaatcaggaggtgagggaccctttaggatcacacagtgac
cgcactcagtcagacgaggaggagctctggatggggccttggaataacctgcacatacca
atgacaaaactgtga
DBGET
integrated database retrieval system
