Rhinichthys klamathensis goyatoka (western speckled dace): 130080572
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Entry
130080572 CDS
T09701
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130080572 (scn4aa)
Ion channels [BR:
rkg04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130080572 (scn4aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
130080572
NCBI-ProteinID:
XP_056101961
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MASLVPRTGSYTLRKFTPESLAEIDRLIQERSTREEVDGVEEEPLAPSNDLEAGKCLPMI
YGEPPKDLLNTPLEDLDPFYKAQKTFIVISKGNTIYRFSAEPAMLCISPFSLVRRGAIKI
LIHSLCFKYFSLFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTFEATIKLLSRGFCI
GPFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKMVDVMILTVFALAVFALIGLQLFMGNLRHKCIRWPIPNSTIFDVYNSTMANDTT
LNVTDTFDFKAYISNEENQYFLEESLDALICGNSSDAGRCPEGYTCMKAGRNPNYGYTSY
DNFGWAFLALFRVMTQDYWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMA
YDEQNAATLAEAIEKEEKFQRLLEQLRNQEVGSKASLASQTTQSRGSNRTGSLHSLDGDD
AIKDCNGRIVPRLIINRVSSDRELSQEKFTRDPPEEDDKSMSSKHSMQYLDQPKLSKRTA
SAVSVLTATMEDLEDAQRPCPPGWYKFADIFLKWDCWAPWVIFKNWVHFVVMDPFVDLGI
TICIVLNTLFMAMEHYPMSTDFEHVLSVGNLVFTGIFTAEMVFKLIALDPYYYFQVGWNI
FDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLSMLIKIIGNSVGALGNLT
LVLAIIVFIFAVVGMQLFGKSYKDCVCKISQDCELPRWHMNDFFHSFLIVFRILCGEWIE
TMWDCMEVAGANMCLIVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSAGDDDGEMNNLQI
AIGRITRGIDWLKAFVASMVGQILGKKPPDNKEGGVDGDIELYALNHLDEGKMADGLTNS
LSLTLTVPIARFESDVEEDSDESSDEEDREATLNDDDSSVCSTVDYRPPEPEPEPEEEEE
PEPEEPESCFTEGCVKRCTCLSVDVTEGWGKKWWNLRRTCFTIVEHDYFETFIIFMILLS
SGALAFEDINIERRRVIKIILEYADKVFTYVFIVEMLLKWVAYGFKTYFTNAWCWLDFLI
VDVSLVSLAANLMGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVL
LVCLIFWLIFSIMGVNLFAGKFYHCINTTTEERFPMDVVNNRSDCMALMHTNEARWVNVK
VNYDNVGLGYLSLLQIATFKGWMDIMYAAVDSREVEEQPSYEINLYMYLYFVIFIIFGSF
FTLNLFIGVIIDNFNQQKSKFGGEDLFMTEEQKKYYNAMKKLGSKKPAKPIPRPSNIIQG
VVFDFISKQFFDIFIMVLICLNMVTMMIETDDQSTEKEDILYLINLVFIIIFSGECVLKM
FALRQYFFTIGWNVFDFVVVILSVAGLMLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRG
AKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKQAGIDDIFNFETFGG
SIICLFEITTSAGWDGLLLPIMNSGPPDCDPDIENPGTDVRGNCGNPGMGIMFFCSYIIM
SFLVVVNMYIAIILENFNVAQEESGDPLCEDDFTMFDETWEKFDVDATQFIEYNRLFDFV
DVLQEPLRIAKPNRLKLITMDLPIVTGDKIHCLDILLAVTREVLGDTIEMDAMKESIEAK
FIMNNPTSASFEPITTTLRRKEEERAAIAVQRTYRRHLLKRAIRHACFMRRSKRKVSSQG
DEEPPETQGLIERKMDALYGSNPELAMALELQARPMPSNGQPPEPTSVPQHRASVTYPRP
QGQLIIPVEFTREVILRSAPTTHGLCSSENATLKESIV
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggcaagccttgtccctcgcacaggctcatacacattacgcaaattcaccccagagtcc
ctggcggagatcgacaggctcatccaggagaggagcaccagggaggaagtagacggggtt
gaggaggaaccactggcaccaagcaatgatctggaggcaggaaagtgtctgcccatgatc
tatggtgaaccaccaaaagatctcctcaacacgcctctggaggatctagaccccttctat
aaagcacagaaaacgtttattgtcataagcaagggaaacacaatctacaggttttcagct
gaaccagcaatgctttgtatcagtccttttagtcttgtcagaagaggagccatcaaaatt
cttatacattcattgtgcttcaaatattttagtttgttcatcatgatcaccatcctgtcc
aactgcgtgttcatgacaatgagtaaccctccagcctggagtaaaacagtcgagtatgtt
tttactggtatatatacctttgaagcaacaatcaaacttttgtcacgaggcttctgcata
ggacctttcacattcctacgtgatccatggaactggcttgatttcatggtgattagcatg
gcgtacatcacagagtttgtagaccttggtaatgtgtcagcactgaggacgtttcgtgtg
cttcgagctctcaaaacaatcacagttatccctggtttgaaaaccattgtcggggctttg
attcagtcagtcaagaagatggtagacgtaatgattttgaccgtctttgcactggctgta
tttgccctcattggcctgcagctgttcatgggaaatctacgtcataagtgcatccgttgg
cccattcccaacagcaccatctttgatgtctacaactccaccatggccaatgacaccacc
ctcaacgtcacagatactttcgatttcaaagcatacataagcaatgaagaaaaccaatac
tttctggaagaaagtttagatgctttaatatgtggtaacagctctgatgctgggaggtgc
ccagaaggatacacttgtatgaaggctggccgaaacccaaattatggctacaccagctat
gacaactttggctgggcctttctcgccctcttcagagtcatgactcaggactattgggag
aatctcttccagttgacccttcgtgctgctgggaagacctacatgatcttctttgtggtg
gtcatcttcctgggctctttctacctcatcaatctgatcttggctgtggttgcgatggca
tatgatgagcagaatgcggccaccttggctgaggccattgagaaagaagagaagtttcaa
agattgctagagcagctcaggaaccaagaggtaggcagtaaagcatctctggccagccag
acaactcaaagtcgagggtcaaacaggacaggttccctgcacagtcttgacggcgatgat
gccataaaggactgtaatggccggattgtgccccgcctcatcatcaacagagtctcctct
gacagagagttatcacaagagaaattcacaagagatccgcctgaagaggatgacaagtcc
atgagctccaaacacagcatgcagtacctggaccagcctaagctctccaagagaacagct
agtgccgtcagtgtgctcactgccacgatggaggatcttgaagatgctcagaggccttgt
cctccgggctggtataaattcgctgatattttccttaaatgggactgctgggctccctgg
gtcatctttaagaattgggttcattttgtagtgatggacccatttgttgatctaggtatc
accatctgcattgttctcaacacacttttcatggccatggagcactaccccatgagtacg
gatttcgaacatgttctctcagtaggcaacttggtatttacaggaatcttcacagctgaa
atggtgttcaagcttattgctttggacccctactactacttccaggtgggctggaacatt
tttgacagcatcattgtcacactcagtctggtagagttgggactggccaatgttcaggga
ttgtccgttcttaggtccttccgtttgctacgtgtcttcaaactcgctaaatcttggccc
acccttagcatgctgattaagatcatcggcaactcagtcggtgccctggggaacctaacg
cttgtcctggccatcatcgtcttcatcttcgccgtggtgggcatgcagctctttggcaag
agctacaaggactgtgtttgtaagatctctcaggactgcgagcttccccgctggcacatg
aacgacttcttccactcttttctcatcgtcttccggatcttgtgtggagagtggatcgag
accatgtgggactgcatggaggtggcgggagcaaacatgtgtttgatagtcttcatgatg
gtcatggtcattggaaaccttgtggtgctgaatctgttcctggccctgctgctcagctcc
ttcagtggggataacctgtctgcaggtgatgacgatggtgagatgaacaaccttcagatc
gccattggtcgcatcaccaggggtatagattggctcaaagccttcgtcgccagtatggtg
ggacagattctaggaaagaaacctcctgacaataaggagggaggagtggacggagacata
gaactatatgctttaaaccacctggatgagggaaaaatggcagatggcttgaccaactct
ttgtctctgacactgactgtgcccattgctcgttttgagtccgatgttgaagaggactcc
gatgaatcttctgatgaggaggacagagaggccactcttaatgatgacgactcttcggtt
tgtagcacagtggactaccgacctccagaacctgagcctgagcccgaagaggaagaagaa
cctgagcctgaagagccagagtcctgtttcacagagggttgtgttaagcgctgtacatgt
ttgagtgtagacgtcactgaagggtgggggaaaaagtggtggaacctgcgaagaacatgc
ttcaccatcgttgagcatgactactttgagaccttcatcatctttatgatcctccttagc
agtggagcactggcttttgaggatatcaacattgagcgccgcagagtgatcaagatcatc
ctggagtatgctgataaagtctttacatacgttttcattgtggagatgttactgaagtgg
gtggcatacggtttcaagacgtacttcactaatgcatggtgctggctggacttcctcatt
gtggatgtgtctctggtcagtttagcagccaatttaatgggctattctgagttgggacca
atcaaatctctcagaacactcagggctcttcgaccccttcgagctctgtcgagatttgag
ggaatgagggtggtggtgaacgcactggttggggcaattccctccatttttaatgtgctc
ctggtgtgtctgatattctggctcatcttcagcattatgggagtcaatctgtttgctgga
aagttctaccactgcatcaacaccaccacagaggaacgctttcccatggatgtggtcaac
aacaggagtgactgcatggcactgatgcacaccaatgaggcgcgctgggttaatgtcaag
gtcaactatgacaacgtgggtcttggctacctctctctactgcaaattgccacattcaaa
ggctggatggatatcatgtatgctgcagtggattctagagaggtggaagagcagccatca
tatgagatcaacctttacatgtacctatattttgttattttcatcatttttggctccttt
ttcactctcaacctcttcattggtgtcatcattgacaactttaatcagcaaaagtcaaag
tttggaggggaagaccttttcatgacagaggaacagaaaaagtactacaatgccatgaag
aaattgggttccaaaaaacctgcaaaacctatccctcggccttcgaatattatccagggt
gtggtgtttgacttcatctcaaaacagttctttgacatctttatcatggtgcttatctgc
ctcaatatggtgaccatgatgatagagacagatgaccagagtactgagaaagaggatatc
ctatacctgatcaatttggtgttcatcatcatcttctcaggggaatgcgtacttaagatg
tttgcgctcagacagtacttcttcactattggctggaatgtctttgattttgttgtggtc
atcctttctgtagcaggtctgatgttatcggacatcattgagaagtactttgtgtctccc
accttgttccgtgtcatccgacttgctaggatcggccgtgtgcttcgtctcatcagaggt
gcgaaaggcattaggactcttttgtttgccttgatgatgtcacttcctgccctcttcaac
attggactgcttctgttcctcatcatgttcatcttctcaatttttggcatgtctaacttt
gcctatgtgaaaaagcaggcaggcatcgatgacatcttcaactttgaaacatttggcggt
agcatcatctgtctgtttgagatcacaacctcggcaggctgggatgggcttctgctgcct
attatgaacagcggccctccagattgtgaccctgacatagagaaccccggtacagacgtt
cggggtaactgcgggaatcctggcatgggaatcatgtttttctgcagttacataatcatg
tcgttcctggtggttgtgaacatgtacattgctatcattcttgagaacttcaatgttgct
caagaggagagtggagacccactctgcgaggatgactttacgatgttcgacgagacatgg
gaaaagtttgacgttgatgctacacagttcatcgaatacaaccgcttgtttgactttgtc
gatgtcttgcaggaacctctgcgaattgccaaacccaaccgcctcaaactaatcaccatg
gatctgcccattgtaaccggagacaaaatccactgtctggatattcttctggcagttacc
cgcgaggttcttggtgacaccatcgagatggatgccatgaaggagagcattgaagccaag
ttcataatgaacaaccccacatctgcctcatttgagccaatcaccaccactctcaggagg
aaggaggaagagcgagcagccattgcagttcaacgaacataccgtagacatctcctcaaa
cgtgctatccgacatgcctgctttatgcgtcgctcaaagagaaaagttagtagtcagggc
gacgaagaacctcctgaaacccaagggctaattgaaaggaaaatggatgccttgtatggt
agcaacccagaacttgccatggctcttgagttgcaggctaggcctatgccgtctaatgga
cagccacctgagcccacctcggtcccgcagcatagagcatcagtgacctaccctcggccg
cagggacaactcataatcccagtggagttcacaagggaggtgatcctccgatctgcaccc
acaacgcatggcctgtgcagttcagagaatgcaacattaaaagagtcaatagtataa
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integrated database retrieval system
