Rhinichthys klamathensis goyatoka (western speckled dace): 130080583
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Entry
130080583 CDS
T09701
Symbol
irf3
Name
(RefSeq) interferon regulatory factor 3 isoform X1
KO
K05411
interferon regulatory factor 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04620
Toll-like receptor signaling pathway
rkg04621
NOD-like receptor signaling pathway
rkg04622
RIG-I-like receptor signaling pathway
rkg04623
Cytosolic DNA-sensing pathway
rkg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
130080583 (irf3)
04621 NOD-like receptor signaling pathway
130080583 (irf3)
04622 RIG-I-like receptor signaling pathway
130080583 (irf3)
04623 Cytosolic DNA-sensing pathway
130080583 (irf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130080583 (irf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130080583 (irf3)
04131 Membrane trafficking [BR:
rkg04131
]
130080583 (irf3)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
130080583 (irf3)
Membrane trafficking [BR:
rkg04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
130080583 (irf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF
IRF-3
Motif
Other DBs
NCBI-GeneID:
130080583
NCBI-ProteinID:
XP_056101986
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MAQPKPLFVPWLYQKIESGSYPGVCWTSKELQQFSIPWKHALRHDKNSDDVLIFKAWAQT
SASGDSRINGDPSVWKRNFRSALRAKGFKMVFDNKNDTANPHKVYQFPSDRLSAGSEGSQ
ETDFSPELYLEEESVFSKNPSQGLEGQLTGLNLQESPSRVHEVWNSEQLYLGQQLFQKMN
PCSEPQFTGMARFQRVDPPVAFSSAGGAVGGLGQISPTDAVTAVNPHSPEYQRPAACPPH
AEGDQDAIPEPKLETFFRIKVYYKGKMVLEKLVENAGFRLMYQENMDESSADLPLPVVRL
PPPHDILDQTQARLTNDILNNLGGLEIRRSDAVVYGHRWGNSRIYWGLCKHEKSPTTREL
SKNTPDPIYFFKNYISGLMEFMETSGESPSYTLYFFLGEKWPDPKMRPWEKKLIMIEVIL
TSLEGLNTLAVTRGASSLQSVELQLSLEQMMELC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaccaaagccgctcttcgttccctggttgtaccaaaagatagagagtggaagt
tatcctggagtgtgttggaccagtaaagaacttcagcagtttagcattccatggaagcat
gctttgagacacgacaaaaacagtgatgatgtcctcatattcaaggcatgggctcagacc
agcgcttctggagacagcaggataaatggagatccctctgtttggaagagaaacttccga
agcgctctgcgtgccaaaggcttcaagatggtatttgacaacaagaatgacactgctaat
ccgcataaagtgtatcagtttccatctgatcgtctttctgcaggatcggaagggtctcaa
gagactgatttttctccagaactatatttggaggaggaaagcgtgttctctaaaaaccca
tctcaaggtttagagggacaattaactggactaaaccttcaagaaagtccctcccgagtc
catgaagtttggaattcagagcagttatacttgggacaacaactcttccaaaaaatgaat
ccatgttcagaaccccagtttactgggatggcccgttttcaaagagtggaccctcctgta
gccttctcttcagctgggggtgctgttggtggtttggggcagatttcaccaactgatgcg
gtgacggcggtgaatcctcattctccagaatatcagcggccggcggcgtgtccaccacat
gctgaaggggatcaggatgccattcctgaaccaaaactggagacattttttcggattaag
gtgtattacaaagggaagatggtgttagaaaagctggtggagaatgctggattcagactg
atgtatcaggaaaacatggacgagtccagtgctgacctaccactaccagtggtgaggctg
cctcctccacatgatatcctggatcagacccaggccaggcttacaaatgatatcctgaat
aatctgggcggtctggagatcaggagatcggatgctgtggtttatggccaccgctgggga
aacagcaggatctattggggtctctgcaaacatgaaaaaagcccaacaaccagagagctc
tccaagaacacacctgaccccatctacttcttcaaaaattatatttcaggtttgatggag
tttatggagacgagcggtgaatctccctcttatactctttacttctttctgggagagaag
tggccggaccccaaaatgagaccttgggagaagaaactcatcatgatagaggttatcctg
acttcactggagggtttgaacacgttggctgttacacgtggggcgtcttcactgcagtca
gtggagctacaactctctctggagcaaatgatggagttgtgttag
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integrated database retrieval system
