Rhinichthys klamathensis goyatoka (western speckled dace): 130082924
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Entry
130082924 CDS
T09701
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130082924
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Protocadherins
130082924
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
BppU_N
Motif
Other DBs
NCBI-GeneID:
130082924
NCBI-ProteinID:
XP_056103821
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MGKYIVKMRRGRNGEPKWAALWLLGVSLLWNTVGALTRYTIPEELHEGSVIGNIAKDLGL
DVSDIANRNLLIASESSRQYFSVDSEKGELVVNSRINRESLCPQSASCILPLQVIIENPL
QLHRFEIEIQDINDNAPIFHTSDGILEIAESISLGDRFPLESAEDLDVGMNSLKSYSLSN
NECFRLNVKTLGDGRKVPELVVAKPLDREKKSVYKLILTAVDGGEPAKSGTTSIHINVLD
SNDNAPKFDLPAYKASLRESAPVGSTVLTIKGTDLDEGDNGEIQYFLGVHTPEPVRKCFA
LKPDTGEITVIGNIDYESAKSYRFDVSAKDKGNPELVGHSSVQIDIMDENDNPPEIILTS
SPSPVPENASVGTVVALINVNDLDSDVNGRVNVNISPGVPFTLKPSFDNHYSLVTDSSLD
REVISEYNIEIVATDSGVPPLNTLKAVNVKVLDVNDNHPVFSQTSYNVYIQENNLAGVSL
FSVSASDIDQDKNALLTYSVLDLSSSQVPASSYFYINSENGTIYSMSSFDYEKMKLISIV
VQAKDHGSPSLSNNATVHVFILDRNDNAPAVIYPSTSMGSVPHQRMPRSAKAGHLVTKVT
AVDADSGHNAWLFYRLAEATDASLFSVNLHTGEVRTKRAVSEQDDSSQRLMIEIKDNGEP
IQSTTVTVDILIEDGFHEPISDYKEKTVQPNKKSGKITLYLIISLAAVSLLCLMTFFILL
VKCARGSRGGSSCCIRRTDSGYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFGSYL
SPMSEFSDLTLVKPSSTTNFTDTLNVLDASLPDSAWTFESQQQKPPNSDWRFPPNQRPGP
SGQQRFHTLQQRWTPYEKSRAGVRPDEAGAGPGVIAGTGPWPNPPTEAEQLQALMAAANA
SEATATLGPRYNLQYGPEYRQNVYIPGSTATLTANPQQQVPQQALPPPQALPPAEVPKAA
QTPASKKKPTKKDKK
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatatatcgtgaaaatgagacgcgggaggaatggagaaccgaaatgggcagca
ctttggctactcggtgtctctcttttgtggaatacagtcggagctctgactcgctatact
ataccagaagaactacatgaggggtcagtcattggaaatatcgctaaagatcttggtctt
gatgtctccgatattgcaaatcgcaatttactgatagcttctgagagcagcagacagtat
ttcagcgttgattcagaaaagggtgagttggtcgtgaacagcagaattaacagagaaagt
ctgtgccctcaaagcgctagctgcattttgccattacaggttattatagaaaatccgtta
caattgcatagattcgagatagaaatacaagatataaatgataacgcaccgattttccac
acatcagacggtattttggaaatagctgaatccatctctctgggagaccgatttccgctt
gagagtgcagaggatttggatgtagggatgaatagtttgaaatcttattcgctaagcaat
aatgaatgtttccgattaaatgtgaaaacgctaggggatggtaggaaagtaccagagctt
gttgttgctaaaccactggatagagagaaaaaatctgtctacaaactaattttaactgct
gtagatggcggtgagcctgccaaatctgggactacttcaatacatatcaatgttttggat
agtaatgacaatgctccaaaatttgacttgccagcatacaaagcatccttacgagaaagt
gctcccgttggttcgactgtgttaactataaaaggcacggatttagatgaaggtgacaac
ggcgagatacaatattttttaggtgtacatacacccgaacctgtgagaaaatgttttgct
ttgaaaccggacacgggggaaattacagtaataggaaatattgactacgaatctgctaaa
tcatacagatttgacgtgagtgctaaagacaaagggaatccagaactagtgggtcattcg
tcggttcaaatagacataatggatgaaaatgataaccctccagagattattttaacatcg
tcacccagccctgtgcctgaaaatgcctctgtcggaacagttgtagctttaattaacgta
aatgatttagattctgatgttaatggcagagtaaacgttaatatatctcccggggttcca
tttaccttgaaaccgtcctttgacaatcattattcactggtaacagactcctctttagat
cgtgaagtaatttcagaatataacatagaaatagtagcgaccgactctggtgtaccacca
ttaaatacgttaaaggctgtaaatgttaaagtacttgacgtgaatgacaaccatccagta
ttctcgcagacctcatataatgtttatatacaggaaaacaatttagcaggtgtttcattg
ttttctgtatctgcatctgacattgaccaagataaaaacgctttactcacttattcagtt
ttggatttaagttcaagccaagtgccagcatcatcttatttttatatcaattctgagaac
ggaactatttacagcatgagctcatttgattatgagaaaatgaaactcatcagcatcgta
gttcaagctaaagatcatggctctccatctctgagcaataacgccactgttcatgtgttt
attctggaccggaacgataacgcaccagctgtcatttacccgtccacatccatggggtct
gtccctcatcagaggatgccccgttctgctaaagcaggacatctcgtcactaaggtaaca
gcagtggacgcggactcgggtcataacgcctggctcttctacaggctcgcggaggccacg
gacgcgtcactgttcagtgtgaatttacacacgggagaggtgaggactaaacgcgctgtt
tcagagcaggatgactcctctcagagactgatgatagagataaaggataatggagaaccg
atccagtctaccacagtcacagtggatatactgatagaggacgggtttcatgaacccatc
tcagactataaagagaaaacagtccagcccaacaagaaaagcggcaaaattactttatat
ctgatcatctctttagccgctgtgtctttgttgtgtctgatgacgtttttcatcctactg
gtgaaatgtgcgcgaggcagtagaggcggctcaagctgctgtatcaggcgaactgattct
ggatacaagaaccccaacagaaacctgcagatccagctcaacactgacgggcccattaag
tatgtggaggttctgggaggagacatgatgtctcagagtcagtcctttggctcctatctc
tctccaatgtcagaattcagtgatctcaccctcgttaagcccagcagcaccacaaacttt
acagacacgctaaacgtgcttgatgcgtcattaccagacagcgcgtggacgttcgagagt
caacagcaaaagccacctaactcggattggcgatttcctccaaaccagagacccggacca
agcggtcaacaaaggttccacaccctgcagcagagatggactccatacgagaagtccagg
gctggagtgcgtcctgacgaggcaggtgccggccctggtgtgatagcgggaacaggaccg
tggcccaacccccctaccgaagctgaacagctccaggctctgatggcggcagccaacgca
agtgaagccactgcaactctcggccctcgctacaatctacagtacggcccagagtaccgc
cagaacgtgtacatcccgggaagtaccgccaccctcacggccaaccctcagcaacaggta
ccccagcaggcccttccccctcctcaggccctgccccccgccgaagtccccaaagcagct
cagacgcccgccagcaagaagaagcccaccaagaaagacaagaagtaa
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