Rhinichthys klamathensis goyatoka (western speckled dace): 130085341
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Entry
130085341 CDS
T09701
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130085341 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130085341 (tdg.2)
Enzymes [BR:
rkg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
130085341 (tdg.2)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
130085341 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
130085341
NCBI-ProteinID:
XP_056107033
LinkDB
All DBs
Position
Unknown
AA seq
446 aa
AA seq
DB search
MAVRPPIKMEERQYSSLTAPMDYLQYWYQTSPQQYQPEQVPQYHQLVNATQYAERPMEDK
IMTDLAVHQDPYLDQPHQPHQDPYLDQPHQDPYLDQPHQDPYLDQPHQDSYLDQPQNHHH
QPSVQQPAPPALTAKGKKRGRPLKGEGKERTEAEESAKKAKRTLDRFNGMSVEEVMSRKL
PDVITHNLDLLIIGINPGLLSAFKGRHYPNPGNHFWKCLFLSGLTEEQLNHMHDQTLPER
YGIGFTNMVERTTPGSKDLSNKEIREGGHQLLEKLQKYRPLIAVFNGKCIYETFCKEIFG
VKAKNLEFGLQPYKVPETETVCYLMPSSSPRCAQFPRAQDKVHFYIKLKDLRDQLKGEGK
TQEIQETNYTFDVTLAKEDAKRLAIKEEQHDPEYEKTCAHGSWGEPQQAFGAHPSTDTDQ
VTDNRWTMQPFADQIPDIRCSNSRTT
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaagaccaccaattaagatggaagaaaggcagtattcatctctgacggcccct
atggattatcttcagtattggtatcaaaccagtccccagcagtaccagccggagcaggtg
ccacagtaccaccagctggttaatgccacacagtacgccgagagacccatggaagacaaa
atcatgactgatttagcagtgcatcaagatccatatctggatcaacctcatcagcctcac
caagatccatatctggaccaacctcatcaagatccatatctggaccaacctcatcaagat
ccatatctggatcaacctcatcaagattcatatctggatcaacctcaaaatcatcatcat
caaccctctgtccaacaaccagcccctccggcattgacagcaaaaggaaagaaaagggga
aggcctctaaaaggtgaaggaaaggaaaggacagaagctgaggagtctgccaagaaagca
aagaggacgttagatcggttcaacggcatgtcagtggaggaagttatgtctagaaagctg
ccagacgtcatcacacacaatcttgacttgctgattatcggcatcaatcctggactgttg
tcagccttcaagggaaggcattatccaaatcctgggaaccatttttggaagtgcttgttt
ctttccgggctgactgaagaacagctgaaccacatgcacgatcagacactacctgaacgc
tatggcattggtttcaccaatatggtggagaggaccacacctgggagtaaagacctatca
aacaaagagatccgtgaaggtggccaccagcttttggaaaaactccagaaatacagacct
ttaatcgctgtgttcaatgggaaatgtatttatgaaaccttttgcaaggagatatttgga
gtgaaggccaagaacttagagttcggattgcagccctacaaagtgcccgaaacggagacg
gtttgctatctgatgccatcgtctagcccacgctgtgcccagtttcctcgtgctcaggac
aaagtgcatttctacatcaagctaaaagatctcagggatcagctgaagggagaggggaag
actcaggagatccaagagacaaactacacatttgatgtgactctggccaaagaggatgcc
aaaagattggcaattaaagaagagcagcatgaccctgagtacgagaagacctgtgcgcat
ggatcatggggggaaccacagcaagcgtttggagcccatccttctacagatacagaccag
gtaacggacaaccggtggacaatgcagccgtttgcagaccagattccagacatcagatgt
agcaacagccgaacaacctga
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integrated database retrieval system
