Rhinichthys klamathensis goyatoka (western speckled dace): 130086544
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Entry
130086544 CDS
T09701
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04010
MAPK signaling pathway
rkg04020
Calcium signaling pathway
rkg04510
Focal adhesion
rkg04540
Gap junction
rkg04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130086544 (pdgfrb)
04020 Calcium signaling pathway
130086544 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130086544 (pdgfrb)
04540 Gap junction
130086544 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
130086544 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rkg01001
]
130086544 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
rkg04090
]
130086544 (pdgfrb)
Enzymes [BR:
rkg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
130086544 (pdgfrb)
Protein kinases [BR:
rkg01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
130086544 (pdgfrb)
CD molecules [BR:
rkg04090
]
Proteins
130086544 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
Ig_VEGFR-1-like_5th
VEGFR-1-like_Ig-like
RIFIN
EcsB
Motif
Other DBs
NCBI-GeneID:
130086544
NCBI-ProteinID:
XP_056108580
LinkDB
All DBs
Position
Unknown
AA seq
1068 aa
AA seq
DB search
MKSFTISRFQLTAMTTGLVLLCLGGSGLELNPSVPEVILSINSSFTITCSGWRNVSWHYK
REENVPAFHTEARSPTSSVLSLEHVTWTHTGVYVCSENGTNETREVAVFVPDPEVWFLNN
DHNMVTKTREESTIPCLVTDPSINVTLYERDTEIVVEGSYNPSVGYTAALDDRNYICRGE
LNGLEKESIPFYVFSIFAPEALDPYINASKTVLKQGETLNVNCTVHGVQLVFFKWDFPNQ
DEDDIEPLTDVLSSMSMRSCLNITKVSLARSGQYVCHVHEGVGEHTASASIDITVLERGF
VALTSHLDRNVSAHLGENVELKVEIEAYPKPIVRWSKEGTVIRGHNTRQEQETRFVSTLT
LVRIRLEQMGLYTVSIQNEDDIKEMTFDLEVKVRPQITELSDHHLPGKKHAVTCVAEGVP
SPSIQWFSCDSMTKCSNRSAVWSPLVEDPESVSIQTNVTYNNTRRIHQAHSQVTLLRPQL
VTIRCEASNERGARARDIRLVNNTLFSQVAVLAAVLALVVIVIISIIILVAVWRKKPRYE
IRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAHGLS
RSQTTTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVTEY
CRYGDLVDYLHRNKHSFLQSYADKNHITNGSLICNDSDVPTGKEYVSFGSECDGGYMDMT
KDEQMEYVPMQELADSIKYADIQPSPYESPYQQDIYQEQGHRVDHSLVISDSPVLSYGDL
VGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLAKICDFGLARDIMHDNNYISKGST
FLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKRGFRM
AKPSYANEDIYEVMRKCWDEKFEKRPEFSFLVHTMGNMLSDGYKKKYSQVSDSFLKSDHP
AVARVKPLVPSPFPGAFSLESPTSDETPNPSPRPQADGEAPHNEYIIPIPDPKPEEEPQY
EPVLTETPSSSLSSDDETVSMETPSTEPEREELLPEHSGSPEVEESFL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcttcaccatcagccgcttccagctgactgccatgacaacaggtttggttctg
ctctgtctgggaggttcaggtctggaactcaatcccagcgttccagaggtaattctctcc
atcaactcgtccttcaccatcacctgctccggctggaggaacgtctcctggcactacaag
cgggaggagaatgttccggcgtttcacaccgaggcgcgaagtcccacctccagtgttctg
agtctggagcatgtgacgtggacacacaccggggtttatgtgtgctctgaaaacgggaca
aatgagaccagagaggtggctgtgtttgtgcctgatccggaggtgtggttcctcaacaac
gatcacaacatggtgactaagacgcgagaggaaagcacgatcccctgtctggtgacggac
ccgtcgataaacgtcacgctgtacgagagagacacagagatagtggtggagggctcgtac
aaccccagtgtgggctacaccgctgccctggacgacagaaactacatatgcagaggagag
ctgaacggcctggagaaagagtccatcccgttctacgtcttcagtatatttgctcccgag
gctctggatccctacatcaacgcctccaaaacggtcctgaaacagggtgagacgctgaac
gttaactgtaccgttcacggcgtgcaactcgtcttcttcaaatgggactttcccaaccaa
gacgaggacgacattgagcccttgactgacgtcctgtcgtccatgagcatgcggtcctgc
ctcaacatcacgaaggtctcgctggccagatcaggacagtatgtttgtcatgtgcatgag
ggtgtgggggaacacacagcttcagccagtattgacatcaccgttctggaaagaggtttc
gtggctcttacttcacatctggacaggaacgtctcggcgcacctgggagaaaacgtggag
ttaaaggttgagatcgaggcgtatcccaaacccatcgttcgctggtctaaagaaggcact
gttattcgaggacacaacacgagacaggaacaggagacccggtttgtcagcactttgacc
ctggtcaggatccgactggagcagatgggtctctacactgttagcatccaaaatgaagat
gacattaaagagatgacctttgacctagaggtgaaagttcgtcctcagatcactgaactc
tccgaccatcacctgcctggaaagaagcacgcggtcacctgtgtggcggagggggtgccg
tctcccagcattcagtggttcagctgtgacagcatgaccaagtgcagtaacagaagtgct
gtgtggagccccctggtggaggatcccgagagtgtctccatccagactaatgtcacctac
aacaacacacgcaggatccaccaagcgcacagtcaggtgaccctcctccggccacagctg
gtcaccatccgctgtgaggccagcaatgagagaggagctcgagccagagacatcagactg
gtcaacaacacgttgttttcccaggtggcagttctggccgctgtcttagcactggtggtc
atcgtcatcatctccatcatcatcctcgtcgctgtgtggaggaagaagccacggtatgaa
atcaggtggaaggtcattgaatcggtcagtttagatggacacgagtacatctacgttgac
cccattcacctgccctatgacctggcctgggagatgccacgggacagtctggttctgggt
cgtacgttgggatctggagcgtttgggcgtgttgtcgaggcgacggcgcatggcctcagc
cgttcccaaaccaccactaaagtggcagtgaaaatgctcaaatcgaccgcacggagaagc
gagacacaagctctgatgtctgaactcaagatcatgagtcacttgggtcctcacctgaac
atcgtcaacctgctgggcgcctgcaccaaacaaggtccattatacctggtgacagaatac
tgtcgctatggcgatctggtggactacctgcacaggaacaagcacagcttcctccagtcc
tacgccgacaagaaccacatcaccaacggcagcctgatctgtaacgatagtgacgtgcca
accgggaaagaatatgtgtcgttcggcagcgagtgtgatggaggatatatggacatgact
aaagacgagcagatggagtatgtgccgatgcaggagctcgcagactctatcaagtatgca
gatatacagccatcaccctacgagtccccataccagcaggacatctaccaggagcaaggt
cacagggtggatcattctctggtcatcagcgattctccggttctgagctacggtgacctt
gttggttttagttaccaggtggccaaaggcatggagttcctggcctcaaagaactgtgtc
catcgagatctggcagcaagaaatgttttgatctgtgagggcaaactggccaagatctgt
gactttggactggccagagacatcatgcacgacaacaactacatctccaaaggcagcacg
tttcttcctctgaagtggatggcgccggagagcatctttcataacctgtacaccactctg
agtgacgtctggtcttacggcatcttactgtgggagattttcactctgggaggaaccccg
tatccagacctgccgatgaacgagttgttttacagcgctctgaagagaggtttccgcatg
gccaaaccctcatacgccaacgaggacatttatgaggtcatgaggaaatgttgggatgag
aagttcgagaagcgtccagagttctcctttctggtgcacacgatggggaacatgctctca
gacggatataaaaagaaatactctcaggtgagcgacagctttctgaagagcgatcaccct
gcggtggctcgtgtgaagccgctggtcccctctccgttcccgggtgccttctctcttgag
tctcccacctcagatgaaaccccaaacccgagcccgcgcccgcaggccgacggagaggct
ccacacaacgagtacatcatccccatccccgaccccaagccagaggaggagccccagtac
gagcctgtgctgacggaaaccccctcgagctctttaagttctgatgatgagacggtctcc
atggaaaccccgagtactgaacccgagcgagaggaactcctgccggaacattctggaagt
ccagaagtggaggagagcttcctgtga
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integrated database retrieval system
