Rhinichthys klamathensis goyatoka (western speckled dace): 130087828
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Entry
130087828 CDS
T09701
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130087828 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130087828 (lig4)
Enzymes [BR:
rkg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130087828 (lig4)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130087828 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130087828
NCBI-ProteinID:
XP_056110283
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MEGASSDATPQTSVAAQVPFIHLCTVLEKIQKTKLRPDKSKILKEFIDSWRNFHAALHKD
NSNTTDSFYAAMRLFVPQFERERMAYGIKENMLAKLYIEVLGLPKNGPEANKLLNYRAPT
TSQGETGDFALTAYFVLKKRCTSQGNLSIKEVNDFLDSVAVNNASKQKDQVKKSLLHLIT
QSSALEQKWLIRMILKDMKLGISKETILQVFHPDASELYNVTTDLNKVCLQLHDPSVSLS
EVSIELFSAFKPMLAAVANIRQIEKQMGNRPFYIETKLDGERIQLHKAGDVYKYYTRNSY
EYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPTTETFMQKGSKFDIKKLMD
DSDLQTCFCVFDVLLVNNQKFGNEPLKKRYETLETVFTPIKGRIQLVSKSDGKTMQEVVN
FLNEAIDNLEEGIMIKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRR
SGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTLKELYDLGLKLAKHWKVYNKNNPPA
AILCGTEKPEVYIEPRNSVILQVKAAEIVSSEMYKTNCTLRFPRIERIREDKEWHQCMTL
TELSQFRSRASGKLASRHLHIQEDQPEKKKRKFVAKAKKTIGVISHFKSQDLSAVAKETD
MFEDVEFCVINGDDVHSKAELEKGVARCGGIVVQNPGKDTYCVIAAVQNMRVKNLVSSDQ
HDVVWAAWLLECLENKQVIPWQPRHMIHMSPSTRDHFSKEYDQYGDSYYVDTDEQQLMEV
FERIVPTEAKCPSVAKIEAENAWDDLPTSIFRPYSAYFDRCADFEDPKSIIRGTCLDTRA
LEFRFHGGKVVEELKEGISHVIVEGERRALDLKTLRRLYTKKFKIVRESWVTDSIKAGHG
EDEIDYLI
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagcctcaagtgatgccacaccacagacttctgttgctgcacaagttccgttc
atacacctctgcacagttctggagaagattcaaaagaccaaactccgaccagacaaaagc
aaaatcctaaaggagtttatagattcatggaggaattttcacgcagcccttcacaaggac
aattccaacaccacagattccttttatgcagcaatgcgtctctttgtgcctcaatttgaa
cgagagcgaatggcttacggtataaaagagaacatgcttgccaaactgtatattgaggtt
ttaggcttacctaaaaatggacctgaggcaaacaaacttctaaattacagagctccaacc
acatctcaaggagaaacaggtgactttgcccttacagcctactttgtcctgaaaaaaagg
tgtacaagtcaggggaatttaagcattaaggaagtcaacgacttcttggattctgtagcg
gtcaacaatgccagcaaacagaaggatcaagtgaagaaaagccttttgcatctgataact
cagagctcagctttggaacagaagtggctcattcgaatgatcctcaaggacatgaaactt
ggcattagcaaggagacaattcttcaggttttccatccagatgcatcagaactctacaat
gtcaccacagatctgaataaagtgtgcctacaacttcatgatccatctgtgtcccttagt
gaggtctccattgagctgttttctgcatttaaaccaatgctggctgctgtcgccaacatt
agacagatagagaagcaaatgggcaaccggccattctatattgagacaaagctcgatggt
gaacgcattcagctgcacaaagctggagatgtttacaaatactatacaaggaactcttat
gagtacacacaacagtttggggcctctccactagagggctccctcacaccatacatacac
aatgtcttcaaacctcatgtggtgaactgcatactggatggagagatgatggcttataac
cctacaactgagaccttcatgcaaaagggcagtaagtttgatattaaaaagctgatggat
gactctgatttgcaaacctgcttttgtgtatttgatgttttgttagtgaacaatcagaag
tttggaaacgaacctctcaagaagcgctacgaaactcttgagactgtcttcacccccatc
aaaggccgtatccagctggtcagtaaatctgatggcaaaaccatgcaagaagtagtgaat
ttcctcaatgaagccattgacaatctggaagagggtattatgattaaggatcccatgtcc
atctacaaaccagataaacgtggtgaagggtggctgaaaattaagcccgaatatgtggac
ggtctgatggatgaactcgatctgctaatagtgggaggctactggggtaaaggccggaga
agcgggatgctctctcattttctctgtgcggtagcagaggtgccaagtcctggggaaaag
cccacagtattccacaccctctgccgcattggatcaggctacactttgaaagaactgtac
gatcttggtctgaagttagccaaacattggaaagtttacaacaaaaataatcctccagca
gccatcttgtgtggaacagaaaaaccagaggtttacatagaaccacgcaactcagtgatc
ctacaagtcaaagcagcagagatcgtttctagtgaaatgtataaaaccaactgcacattg
cgtttcccccgaatagaaagaatcagagaagacaaagagtggcatcagtgcatgaccttg
accgaactgagccagttccgctccagggcttctggaaagctggcatctagacatctgcac
atccaagaggaccagcctgaaaaaaagaagcgcaaattcgtagccaaggccaagaagacc
atcggagtcattagccactttaaatcccaggatttatcagcagttgccaaagagacggat
atgtttgaagatgttgagttttgtgtgataaatggtgatgatgtacattccaaggcagag
cttgagaaaggtgtggcccgttgcggaggcattgttgtgcagaaccctggaaaagacacg
tactgtgtgatagcagctgtgcagaacatgagagtgaagaacctcgtctcttcagaccag
catgatgtggtgtgggctgcttggcttctggagtgtctggaaaataagcaggttatacca
tggcaaccacgtcacatgatccatatgtcaccctccacaagggaccacttctctaaagag
tatgatcagtatggagacagttattacgttgacactgatgagcagcagctgatggaagtc
tttgaaaggattgtccccacagaagctaaatgtccttctgtggctaagatagaagcagag
aatgcctgggatgacttgcccactagcatttttaggccttacagtgcatactttgaccgg
tgtgcggactttgaagatccaaaatccattatccggggtacatgtttggacacacgtgcc
ttagaattccgattccatggtggtaaagttgtggaagaactgaaagaaggaatctcgcat
gtcatcgtagaaggtgagagaagagctctggacttaaagacactgaggcgactttatact
aagaagttcaaaattgttcgggaatcttgggtgactgattccatcaaagcaggccatgga
gaggatgagatcgactacctaatataa
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