Rhinichthys klamathensis goyatoka (western speckled dace): 130088204
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Entry
130088204 CDS
T09701
Name
(RefSeq) TNF receptor-associated factor 2
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04010
MAPK signaling pathway
rkg04137
Mitophagy - animal
rkg04141
Protein processing in endoplasmic reticulum
rkg04210
Apoptosis
rkg04217
Necroptosis
rkg04621
NOD-like receptor signaling pathway
rkg04622
RIG-I-like receptor signaling pathway
rkg04920
Adipocytokine signaling pathway
rkg05132
Salmonella infection
rkg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130088204
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130088204
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130088204
09143 Cell growth and death
04210 Apoptosis
130088204
04217 Necroptosis
130088204
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
130088204
04622 RIG-I-like receptor signaling pathway
130088204
09152 Endocrine system
04920 Adipocytokine signaling pathway
130088204
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130088204
09171 Infectious disease: bacterial
05132 Salmonella infection
130088204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130088204
04121 Ubiquitin system [BR:
rkg04121
]
130088204
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130088204
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130088204
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
130088204
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
zf-RING_6
ATG16
Sina_ZnF
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
130088204
NCBI-ProteinID:
XP_056110845
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
MAAQEPSPPSSMENNKPGFPKKILANKLEDKHLCNCCQNILRRPFQAQCGHRFCSYCFNR
TVGSGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVENLPAVCINEGCAWKGSIRD
YELSHEGKCEFMILSCPLCKELIRFNEQERHNERVCPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRYHVVGCDMSVEKEKIHDHERACA
HEHLNLLLHYIMGMKVSLEGLQPQSLELAGHKAHELHQALRDLEARVSQLSAIPVQGVPS
SSSSSSSSSACAVAPPPPLPTSFTPLPSSVGAALELQLHSEKTKVADLGRRCQDLEVKAG
TFEDVVCVLNREVERFATTMEASNRQHRLDQDKIEALSNKVRQLERQVGVKDLTVAEMEG
RLREMSATTFDGVFIWRISDITKKRQDAIAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDG
TGRGTHLSLFFVVMRGMSDALLKWPFNQKVTLMLLDQSNREHIIDAFRPDITSSSFQRPV
SEMNIASGCPLFCPLSKLEGKNSYIRDDTIFIKAIVDLTGL
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaagaaccctcccccccgtcctccatggagaacaacaagccagggttccca
aagaagatcctggccaacaaacttgaagacaaacatttatgcaactgctgtcagaacatt
ttgagaaggccgttccaagctcagtgcggtcatcgcttttgttcttactgcttcaaccgg
actgttggatctggaccacagaaatgtaatgcctgtatcaaggaggacatcttcgaagag
cccacgtcaattctcaaacaaggctgcgcgtttcccgacaatgctgccagaagagaagtt
gaaaatcttccagctgtgtgtatcaacgagggctgcgcctggaaaggcagtattagagat
tatgagttgagccatgaggggaagtgtgagttcatgattctgtcctgtcccttgtgcaag
gagctcattagatttaacgaacaggaacgtcataatgagcgcgtgtgtcctgagagaacg
ctcaactgcaaatactgtaaagaaccatttcacttcaaaaacatcaaggcccatgatgag
atctgtcccaaatatcctatgatttgtgaaggatgcgcgaagaagaaaatccccagggaa
aagtatgttgaccacatcaagttctgcagcaaattcaggactccgtgcagatatcatgtg
gttggctgtgacatgtcagtggagaaggagaagatccacgatcacgagcgtgcctgtgct
cacgaacatctaaacctgctgttgcactacatcatgggcatgaaggtcagtctggagggc
ctgcagccacaaagtctggagctggcgggtcacaaagctcacgagcttcaccaggcgctc
cgagacctggaagccagagtgagtcagctgagcgccatccccgtgcagggggttccctcc
tcttcgtcctcctcctcgtcctcctccgcgtgtgccgtcgctcctcctcctcctctgccc
acgtccttcacgcctctgcccagctcggtcggcgccgccctggaactgcaactccacagc
gagaagaccaaggtggcagatctgggccggcgctgccaggacctggaggtgaaggcgggg
acgtttgaagatgtggtgtgtgtgctgaatcgagaagtagagcgcttcgccaccaccatg
gaggccagcaaccgacaacacagactcgatcaggacaaaatcgaggctcttagcaacaag
gttcgtcagctggaacggcaggtgggtgttaaagacctgactgttgctgaaatggagggc
agactacgggagatgtccgcaaccacgtttgatggcgtcttcatctggcggatttcagat
attactaaaaagagacaagatgccattgctggacgggcgcctgccatgttttcacctgca
ttttacacaagcaagtatggctataagatgtgcctgcgcatttacctgaacggggatggg
acgggtcgtgggactcacctctcgctgttttttgtggtcatgagaggaatgagcgacgcg
ctgctcaaatggcccttcaaccagaaggtcacactgatgctgctggaccagagtaaccga
gagcacatcatcgatgcgttccgtcccgacatcacttcctcctcattccagaggcccgta
agcgagatgaacatcgccagcggctgcccgcttttctgtccgctgtccaagctggagggc
aagaactcgtacatacgggacgacaccatcttcatcaaagccatcgtggacctcacgggc
ctttag
DBGET
integrated database retrieval system