KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130094684
Entry
130094684         CDS       T09701                                 
Symbol
lsm3
Name
(RefSeq) snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018  RNA degradation
rkg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130094684 (lsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130094684 (lsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rkg03019]
    130094684 (lsm3)
   03041 Spliceosome [BR:rkg03041]
    130094684 (lsm3)
Messenger RNA biogenesis [BR:rkg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130094684 (lsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130094684 (lsm3)
Spliceosome [BR:rkg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130094684 (lsm3)
 Complex C
  U2 snRNP components
    130094684 (lsm3)
SSDB
Motif
Pfam: LSM TIG_SUH DUF8043 vATP-synt_E RimP_C YfkB Peptidase_M16_M
Other DBs
NCBI-GeneID: 130094684
NCBI-ProteinID: XP_056117080
LinkDB
Position
Unknown
AA seq 102 aa
MADDAEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgctgagcagcaacaaactaccaacactgtagaagagcctttggatctg
atccggttgagtctggacgagagaatctatgtgaagatgaggaacgacagagagctgcgc
ggcagactgcacgcctatgaccagcacttaaacatgatcctcggcgatgttgaagagacc
gtgacgactgtggagatcgatgaggagacgtacgaggagatttataagtcaacgaagcgg
aacatccccatgctgtttgtccgaggcgatggagtcgtgttagtggcgccgccgctgagg
gtcggataa

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