Rhodococcus koreensis: JWS14_35090
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Entry
JWS14_35090 CDS
T07497
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rko
Rhodococcus koreensis
Pathway
rko03030
DNA replication
rko03410
Base excision repair
rko03420
Nucleotide excision repair
rko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWS14_35090 (ligA)
03410 Base excision repair
JWS14_35090 (ligA)
03420 Nucleotide excision repair
JWS14_35090 (ligA)
03430 Mismatch repair
JWS14_35090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rko03032
]
JWS14_35090 (ligA)
03400 DNA repair and recombination proteins [BR:
rko03400
]
JWS14_35090 (ligA)
Enzymes [BR:
rko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JWS14_35090 (ligA)
DNA replication proteins [BR:
rko03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JWS14_35090 (ligA)
DNA repair and recombination proteins [BR:
rko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JWS14_35090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWS14_35090 (ligA)
MMR (mismatch excision repair)
DNA ligase
JWS14_35090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JWS14_35090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QSE84009
LinkDB
All DBs
Position
7749873..7751963
Genome browser
AA seq
696 aa
AA seq
DB search
MSESTEAPTPAPGHVREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQY
PDLRTPDSPTQLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRVEQETGPDLHYL
CEVKIDGVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDEYPVPALL
EVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGLG
RSEGFEPASQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDVEHEIDGLVV
KVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPANCP
ECDTPLAPAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAATSLLEAKAI
GDEGDLFSLTEDDLLKTTLFRTKAGGLSANGRRLLDNLDTAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLDRIRESSVEELAAVDGVGGTIAAAVVEWFGVDWHRQIVDKWSAAGVR
MEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAILVRGGKAAGSVSKKTAFVVAGESP
GSKHDKAVELGVPVLDEDGFRRLLEGGPDAVADSGV
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaatcgaccgaagccccgacaccggcccccggacacgtccgggagcactggaac
gagctggccgaggaagtgcggcagcaccagttccgctactacgtccgcgacgcgcccatc
atctccgacggagagttcgacgtgctgttgggcgagctgaacgacctcgagaaccagtac
cccgacctgcggacgccggattcgccgactcagctcgtcggcggcggattcgccaccgac
ttcgcctccgccgaccacctcgagcggatgctgagcctcgacaacgtcttcgcgaccgat
gaactgcgcacctggatcagccgggtggagcaggagaccggccccgacctgcactacctg
tgcgaggtgaagatcgacggcgtcgcgctgaacctggtgtacgagaacggcagactcgtc
cgcgccgccacccgcggcgacggccggaccggtgaggaagtgacgctcaacgcccggacc
atcgacgatatcccggaaaaactcaccggcacagacgaatacccggttccggcgctcctc
gaggtgcgcggcgaggtgttcttccggctcgaggacttcgcggcactcaacgcggcgctc
gtcgaggagggcaaggcgccgttcgcgaatccccggaactccgcggccgggtcactgcgg
cagaagaatccggccgtcacggcccgcaggcgcctcgggatgatctgccacggcctcggc
cggagcgaaggattcgagccggcctcccagtacgacgcgtacacggcgctggcggcgtgg
ggcctgcccgtgtcgacccacaccgtccgcgtcacgggcgcggacgccgtcgtggacagg
gtgcagtactggggcgagcaccggcacgacgtggagcacgagatcgacggtctggtggtc
aaggtcgacgagacgtcgctgcaacgccggctggggtccacgtcgcgggcgccgcgctgg
gcgatcgcgtacaagtacccgccggaggaggccaccaccaagctcctcgacatccgggtc
aacgtcggccgcaccggccgggtcactccgttcgcctacatggagccggtcaccgtcgcc
ggatccaccgtctccctcgccaccctgcacaacggctccgaggtcaaacgcaagggcgtg
ctgatcggcgacacggtggtgctgcgcaaggccggcgacgtgattcccgaggtcctcggg
cccgtggtcgacgccaggaccggcgacgaatacgagttcgtgatgccggcgaactgcccg
gagtgcgacacgccgctcgctcccgccaaggagggcgacgcggatattcgctgccccaat
cagcagtactgccccgcgcaactccgggaacgtgtgttccacgtcgcgggccgcggtgcg
ttcgacatcgaggtgctcggctacgaggccgcgacgagcctgctcgaagcgaaggcgatc
ggcgacgaaggcgacctgttctcgctcaccgaggacgatctgctgaagacgacgctcttc
cggaccaaggccggcgggttgtcggccaacggccgcaggctgctcgacaatctcgatacc
gccaaggacaagccgctgtggcgggtgctggtcgccctgtcgatccgccacgtcggtccg
acggcggcgcgggcgctcgcgggcgagttcgggtcgctcgaccggatccgggagagctcc
gtcgaggaactcgcggcggtcgacggggtcggcggcaccatcgccgcggccgtcgtcgaa
tggttcggcgtcgactggcaccggcagatcgtcgacaagtggtcggcggccggtgtgcgc
atggaagacgaacgcgacgaatcgattccgcgcaacctcgagggcctgtcgatcgtcgtc
acgggttcgctcgagacgttctcccgcgaccaggcgaaggaggcgatcctcgtccggggc
ggcaaggccgcgggttcggtgtcgaagaagacggcgttcgtggtggccggcgaatccccg
gggtcgaagcacgacaaggccgtcgaactcggtgtgccggtcctcgacgaggacgggttc
cgtcgactgctggaggggggaccggacgcggtcgcggattccggagtgtga
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